Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2i13
         (766 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             29   0.036
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    25   0.58 
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    25   1.0  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   4.1  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.5  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.5  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   9.5  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   9.5  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   9.5  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 29.5 bits (63), Expect = 0.036
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = +3

Query: 84   NSALGYVHAVSRNGKRLHHEDEHVGRHRCYGQPHSSYCHR*RDRH*MRPSQS*QNQ 251
            +S +  V AV R    +H    +      YG PHS+  ++ ++RH MRP +  Q Q
Sbjct: 1046 DSLVEAVRAVQRGEMSVHRAGSY------YGVPHSTLEYKVKERHLMRPRKRDQKQ 1095


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
            protein.
          Length = 1010

 Score = 25.4 bits (53), Expect = 0.58
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +1

Query: 556  ERSRMGAAVYAGAQFGTVISMPLSGLL-SAYGFAGGWPSIF 675
            +R + G   ++ +Q   V ++P SG++ S    AGGW SI+
Sbjct: 899  QRGQSGGQTWSNSQVQGV-AVPGSGIVASGQQHAGGWQSIY 938


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +1

Query: 328 GYVITQIPFGILSKRFGA--RLFLGVGMLINSVFGLLVPV 441
           G ++  I FG+++ +FGA  +L +   M++N +   LV +
Sbjct: 242 GMIVFCITFGLVAGQFGAQGKLIVDFFMILNEIIMKLVGI 281


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +1

Query: 229 PVNPNKTSVVSTQDGDYAWDSSLQGYILSS--FFYGYVITQIPFGILSKRF 375
           P +  +   V  Q+ DY  D +   YILS   +++   I  I + ++S ++
Sbjct: 285 PFHTQRLLYVYAQESDYYPDLNEWLYILSGCLYYFSTTINPILYNLMSIKY 335


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 6/19 (31%), Positives = 12/19 (63%)
 Frame = +2

Query: 563 VEWELPYMPVLSSVRLYLC 619
           VEW++  +P + + + Y C
Sbjct: 208 VEWDILEVPAVRNEKFYTC 226


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 6/19 (31%), Positives = 12/19 (63%)
 Frame = +2

Query: 563 VEWELPYMPVLSSVRLYLC 619
           VEW++  +P + + + Y C
Sbjct: 208 VEWDILEVPAVRNEKFYTC 226


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 6/19 (31%), Positives = 12/19 (63%)
 Frame = +2

Query: 563 VEWELPYMPVLSSVRLYLC 619
           VEW++  +P + + + Y C
Sbjct: 204 VEWDILEVPAVRNEKFYTC 222


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 6/19 (31%), Positives = 12/19 (63%)
 Frame = +2

Query: 563 VEWELPYMPVLSSVRLYLC 619
           VEW++  +P + +   Y+C
Sbjct: 200 VEWDIIKVPAVRNEAFYIC 218


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/28 (25%), Positives = 12/28 (42%)
 Frame = -3

Query: 503 PSPSPCMNLTTMSHPYPASAATGTSRPN 420
           P P  C     +  P  +   +GT +P+
Sbjct: 563 PQPPQCPRFRKLDSPSDSGIESGTEKPD 590


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 233,751
Number of Sequences: 438
Number of extensions: 5330
Number of successful extensions: 17
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)