Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc2i08
(612 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam... 29 0.53
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc... 28 1.2
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 2.1
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy... 27 2.1
SPBC56F2.09c |arg5||arginine specific carbamoyl-phosphate syntha... 27 2.8
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 26 3.7
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 26 4.9
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 26 4.9
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual 25 6.5
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 25 8.6
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 25 8.6
>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 543
Score = 29.1 bits (62), Expect = 0.53
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Frame = -1
Query: 444 FKFI-YNLFVPVSGFIFNDNQDH----VVF-SFNISFVHFYCVKFEHVLNL 310
F FI + LF +S F + H +VF S +I F+H YC K +NL
Sbjct: 375 FAFIGFTLFATLSSLFFKVLKIHRRPIIVFGSLSIIFIHIYCFKITSWVNL 425
>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 581
Score = 27.9 bits (59), Expect = 1.2
Identities = 19/79 (24%), Positives = 39/79 (49%)
Frame = +1
Query: 373 DDMVLVIVEDEPRDGYEEIVNKFEKNIEEECDVENILETAAKHGHFIDIKVEPAEEEDTW 552
D+ +L+ D + ++ K+ KN+ +E D++ I A KH I+ + ++ D +
Sbjct: 195 DENLLLADVDTENEVVLSVLEKWIKNVVQEYDIDGIRFDAIKHAP-IEFWLRMSKAADIF 253
Query: 553 SQIDYDYCDIKTENEDYEN 609
+ +Y + E DY+N
Sbjct: 254 TIGEY-FTGSPAEACDYQN 271
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 27.1 bits (57), Expect = 2.1
Identities = 21/85 (24%), Positives = 35/85 (41%)
Frame = -1
Query: 522 FNVDEMTVFRCSF*NILNITLLFYIFFKFIYNLFVPVSGFIFNDNQDHVVFSFNISFVHF 343
F E+++FRC + LLF++ F F ++ +S + F F
Sbjct: 105 FTGSELSLFRCLL--LFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSSFPILHFLFFFFLC 162
Query: 342 YCVKFEHVLNLAFGHSNFVLLLMLL 268
CV + +L+ S +L L LL
Sbjct: 163 VCVFLSFLFSLSHLLSLAILFLPLL 187
>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1019
Score = 27.1 bits (57), Expect = 2.1
Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Frame = +1
Query: 397 EDEPRDGYEEI----VNKFEKNIEEECDVENILETAAKHGHFIDIKVEPAEEEDTWSQID 564
+DE D EE+ + + + EEE + E E A++ + + +VE E + W +++
Sbjct: 937 DDEGDDSVEEVSEYEASDADPSDEEEEESEEYSEDASEEDGYSESEVEDEESGEDWDELE 996
>SPBC56F2.09c |arg5||arginine specific carbamoyl-phosphate synthase
Arg5 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 415
Score = 26.6 bits (56), Expect = 2.8
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +1
Query: 487 TAAKHGHFIDIKVEPAEEEDTWSQID 564
T+ HG+ +D PAE + TW+ ++
Sbjct: 340 TSQNHGYAVDASTLPAEWKATWTNLN 365
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 26.2 bits (55), Expect = 3.7
Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Frame = +1
Query: 346 MDEADIKTEDDMVLVIVEDEPRDGYEEIVNKFEKNIEEECDVENILETAAKHGHFIDIKV 525
++E + +D ++ + D YEE+V K E E +E +T ++ I +
Sbjct: 541 VEEITQELQDTKEVLSKSSKESDDYEEVVGKLRTEAERE--IEKFEKTIRENEESISLFK 598
Query: 526 EPAEE-EDTWSQIDYDYCD 579
E E+ D +Q+ Y D
Sbjct: 599 EEVEKLTDEITQLSERYND 617
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 25.8 bits (54), Expect = 4.9
Identities = 19/69 (27%), Positives = 27/69 (39%)
Frame = -1
Query: 234 SLQFPKMQRYQSLTTHYEILIITLVADTVQKGYVNHK*TIGFRAQNILQKISIVSFKNEE 55
SL P Q L H E L+ Q GY + + T+ R + K+ NE
Sbjct: 523 SLTIPMATEPQILEYHQE-WPQPLIQSIQQHGYSDPRQTLPTRLDSCAAKLREAVISNEN 581
Query: 54 IN*FHNFAL 28
+N H F +
Sbjct: 582 LNPSHKFGI 590
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 25.8 bits (54), Expect = 4.9
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 403 EPRDGYEEIVNKFEKNIEEECDVEN 477
E + Y+EIV +KN+ E DV N
Sbjct: 101 EAAEAYKEIVYDLQKNLASEMDVIN 125
>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 978
Score = 25.4 bits (53), Expect = 6.5
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Frame = +1
Query: 100 LSPEA--DCSFVIYITFLNSIRYKSDN 174
LSPE +CSF +Y F IRY SD+
Sbjct: 316 LSPELKENCSFQLYNLFPYLIRYLSDD 342
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 25.0 bits (52), Expect = 8.6
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = +1
Query: 343 KMDEADIKTEDDMVLVIVEDEP---RDGYEEIVNKFEKNI 453
+ D+ D T+++ ++ +DE + EEIVN EKN+
Sbjct: 344 RQDDVDQATDNNTNTILEDDEKDNDEEEEEEIVNAREKNL 383
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1919
Score = 25.0 bits (52), Expect = 8.6
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = +1
Query: 343 KMDEADIKTEDDMVLVIVEDEP---RDGYEEIVNKFEKNI 453
+ D+ D T+++ ++ +DE + EEIVN EKN+
Sbjct: 344 RQDDVDQATDNNTNTILEDDEKDNDEEEEEEIVNAREKNL 383
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,425,862
Number of Sequences: 5004
Number of extensions: 52260
Number of successful extensions: 169
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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