Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc2i08
(612 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0211 - 22020515-22020687,22020801-22020831,22022060-220221... 33 0.18
08_02_0853 - 21898293-21899564,21899910-21899964,21900079-21901034 31 0.72
04_04_0376 + 24809804-24809888,24810575-24810703,24810797-248110... 31 0.95
11_06_0627 + 25633537-25633884,25635246-25635869 30 1.3
01_05_0167 + 18849791-18849973,18850081-18850250,18850341-188504... 29 2.2
11_01_0518 + 4057428-4057538,4059609-4059801,4059921-4060025,406... 29 2.9
07_03_1228 - 25009736-25010965 29 3.8
06_03_1360 + 29558789-29559020,29559203-29559378,29560285-295603... 28 5.1
10_08_0245 + 16138402-16138548,16138648-16138701,16139106-161391... 28 6.7
04_03_0521 + 16765347-16767324,16769202-16769392 27 8.9
04_03_0512 + 16675940-16677193,16677325-16677853,16678920-166789... 27 8.9
03_02_0715 + 10621789-10623243,10624074-10625018 27 8.9
03_01_0458 - 3521938-3522024,3522133-3522213,3522673-3522806,352... 27 8.9
02_01_0035 - 220036-221419,222050-222801 27 8.9
>03_05_0211 -
22020515-22020687,22020801-22020831,22022060-22022169,
22022715-22023102,22023344-22023397,22023739-22023849,
22023956-22024015,22024618-22024694,22026155-22026188,
22026267-22027235
Length = 668
Score = 33.1 bits (72), Expect = 0.18
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Frame = +1
Query: 340 IKMDEADIKTEDDMVLVIVEDEPRDGYEEIVNKFEKNIEE-ECDVENILETAAKHGHFID 516
++M EA+ E D+ + ED +DG ++ EKN ++ E + + E A+ G+ D
Sbjct: 61 VEMAEAETAKESDVKQLDTEDAKKDGAQDADANEEKNTKDTEGEDVKMAEAEAEAGN-AD 119
Query: 517 IKVEPAEEEDTWSQIDYDYCDIKTENE 597
+K + AE+ED + + ++K E
Sbjct: 120 VK-DTAEKEDKDENTNTEKQELKDAKE 145
>08_02_0853 - 21898293-21899564,21899910-21899964,21900079-21901034
Length = 760
Score = 31.1 bits (67), Expect = 0.72
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Frame = +1
Query: 328 KFYTIKMDEADIKTEDDMVLVIVEDEPRDGYEEIVNKFEKNIEEECDVENILETAAKHGH 507
K +T + +E + + + EDE RD E E N EEE D + E +
Sbjct: 508 KVWTCRPNEEETEDNEIYYEEETEDEERDSEEN-----EINYEEEADQDEEREAEENEIN 562
Query: 508 FID-IKVEPAE-EEDTWSQIDYD 570
+ + + E +E EED WS+ D++
Sbjct: 563 YNEEAEDEESETEEDYWSEFDFE 585
>04_04_0376 +
24809804-24809888,24810575-24810703,24810797-24811020,
24811398-24811607,24811697-24811789,24811899-24811937,
24812041-24812130,24812214-24812316,24812388-24812468,
24812929-24813005,24813156-24813236,24814165-24814256,
24814536-24814662
Length = 476
Score = 30.7 bits (66), Expect = 0.95
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +1
Query: 373 DDMVLVIVEDEPRDGYEEIVNKFEKN-IEEECDVENILETAA 495
D + +V +D+P +G E+ +KF+K IE E +VE + AA
Sbjct: 58 DLLAVVTKKDQPDEGIEDDFDKFQKEVIEAEAEVEASTDKAA 99
>11_06_0627 + 25633537-25633884,25635246-25635869
Length = 323
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Frame = -1
Query: 441 KFIYNL---FVPVSGFIFNDNQDHVVFSFNIS-FVHFYCVKFEHVLNLAFGHSNFVL 283
KF+++L +PV +F+ HV+F+ + +H Y K + ++ GH+++VL
Sbjct: 193 KFLHHLEGHHMPVRSMVFSPVDPHVLFTASDDCHIHIYDAKEKSLIGAMSGHASWVL 249
>01_05_0167 +
18849791-18849973,18850081-18850250,18850341-18850413,
18850729-18850839,18850947-18850992,18851085-18851148,
18851810-18851912,18851999-18852094,18852186-18852215,
18852434-18852533,18852761-18852845,18852965-18853088
Length = 394
Score = 29.5 bits (63), Expect = 2.2
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = +1
Query: 343 KMDEADIKTEDDMVLVIVEDEPRDGYEEIVNKFEKNIEE-ECDVENILETAAKH 501
+MDE + + +DD + ED+ +G E +N+ EK + + +NILET +H
Sbjct: 76 EMDEEEDEEDDDDEEMNEEDDEDEGEE--MNELEKEYRTLQTNQQNILETLKQH 127
>11_01_0518 +
4057428-4057538,4059609-4059801,4059921-4060025,
4060259-4060347,4060424-4060576,4060754-4060888,
4061241-4061407,4062129-4062223,4062367-4062740,
4062903-4063176,4063806-4063822
Length = 570
Score = 29.1 bits (62), Expect = 2.9
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = -1
Query: 612 KVFIILIFSFYITVVIINLTPCV-LLFRRFNFNVDEMTVFRCSF*NILNITLLFYIFFKF 436
KV+ + F + V++I +T CV ++ F N + SF + + L Y++ +
Sbjct: 474 KVYYVYGFMLLVFVILIIVTICVTIVGTYFLLNAENYHWQWTSFFSAASTALYVYLYSIY 533
Query: 435 IYNLFVPVSGF 403
Y++ +SGF
Sbjct: 534 YYHVKTKMSGF 544
>07_03_1228 - 25009736-25010965
Length = 409
Score = 28.7 bits (61), Expect = 3.8
Identities = 20/71 (28%), Positives = 33/71 (46%)
Frame = +1
Query: 397 EDEPRDGYEEIVNKFEKNIEEECDVENILETAAKHGHFIDIKVEPAEEEDTWSQIDYDYC 576
E+EP +G EE E EEE + E E + G + E +EE+ + D +
Sbjct: 316 EEEPEEGGEEEEEPEEGGEEEEEEEEEEEEEEPEEGAEEEEDDEEEDEEEEEEEEDIEED 375
Query: 577 DIKTENEDYEN 609
+ + E E+ E+
Sbjct: 376 ENEEEEEEVED 386
>06_03_1360 +
29558789-29559020,29559203-29559378,29560285-29560346,
29560426-29561212,29561516-29562244
Length = 661
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -3
Query: 205 SKPNNPLRNFDYHSCSGYCSERLCKSQMNN 116
S+P+ + YH CS YC ++ KS+ +N
Sbjct: 12 SRPDCVNSSNPYHECSDYCLRQIVKSREDN 41
>10_08_0245 +
16138402-16138548,16138648-16138701,16139106-16139171,
16139427-16139483,16140490-16140610,16140704-16140744,
16140835-16140886,16141555-16141623,16141697-16141768,
16141890-16142045,16143067-16143284,16143359-16143398,
16143484-16143602,16143726-16143827,16144256-16144300,
16144890-16145030,16145172-16145267,16145415-16145516,
16145611-16145709
Length = 598
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +1
Query: 442 EKNIEEECDVENILETAAKHGHFIDIKVEPAEEEDTWSQIDYDYCDIKTENEDYEN 609
E++ E+E + + + HGH +K+ +EED+ QID +D +N
Sbjct: 336 EESDEDEDQIPESEQETSTHGHDAPVKLPVLDEEDS-DQIDVSGFSGNLRRDDRDN 390
>04_03_0521 + 16765347-16767324,16769202-16769392
Length = 722
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/54 (27%), Positives = 22/54 (40%)
Frame = +1
Query: 376 DMVLVIVEDEPRDGYEEIVNKFEKNIEEECDVENILETAAKHGHFIDIKVEPAE 537
D ++I ED G F I C + + + K H +DI V P+E
Sbjct: 277 DKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSE 330
>04_03_0512 +
16675940-16677193,16677325-16677853,16678920-16678999,
16679450-16679533
Length = 648
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/54 (27%), Positives = 22/54 (40%)
Frame = +1
Query: 376 DMVLVIVEDEPRDGYEEIVNKFEKNIEEECDVENILETAAKHGHFIDIKVEPAE 537
D ++I ED G F I C + + + K H +DI V P+E
Sbjct: 256 DKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSE 309
>03_02_0715 + 10621789-10623243,10624074-10625018
Length = 799
Score = 27.5 bits (58), Expect = 8.9
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +1
Query: 397 EDEPRDGYEEIVNKFEKNIEEECDVENILETAAKHGHFIDIKVEPAEEED 546
ED D EE V E++ EEECD + +A + G D + E +E++
Sbjct: 24 EDGGDDDDEEYV--VEEDEEEECDEDLSASSAGEGGEGTDEEYEEGDEDE 71
>03_01_0458 -
3521938-3522024,3522133-3522213,3522673-3522806,
3523189-3523270,3523420-3523692,3523953-3524162,
3524252-3524337,3525197-3525289,3526003-3526227,
3526320-3526930,3529328-3529395,3529491-3529679,
3529773-3529901,3530013-3532484
Length = 1579
Score = 27.5 bits (58), Expect = 8.9
Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Frame = +1
Query: 394 VEDEPRDGYEEIVNKFEKNIEEECDVENILETAAKHGHFI-----DIKVEPAEEEDTWSQ 558
V+ P GYEE++ K ++ + E + E + H I ++K P ++T+S
Sbjct: 724 VDPYPFQGYEELLKKRQEQL--ELNAEELFSGCRSELHAISTILREVKTAPFRYDETFSG 781
Query: 559 IDYDYCDIKTENEDYENF 612
+ ++ D ED F
Sbjct: 782 MTSNHRDYDGTEEDEWGF 799
>02_01_0035 - 220036-221419,222050-222801
Length = 711
Score = 27.5 bits (58), Expect = 8.9
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = -3
Query: 604 HNPHFQFLYHSSHNQSDSMCPPLP 533
H+PH Q + H+Q PP P
Sbjct: 104 HHPHLQLFHEQHHHQKHQQQPPPP 127
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,303,659
Number of Sequences: 37544
Number of extensions: 280822
Number of successful extensions: 735
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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