Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2i08
         (612 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB209303-1|BAD92540.1|  758|Homo sapiens HIV TAT specific factor...    30   7.4  
Z97632-4|CAB10730.1|  755|Homo sapiens HIV-1 Tat specific factor...    29   9.8  
U76992-1|AAB18823.1|  754|Homo sapiens Tat-SF1 protein.                29   9.8  
BT006886-1|AAP35532.1|  755|Homo sapiens HIV TAT specific factor...    29   9.8  
BC009896-1|AAH09896.1|  755|Homo sapiens HIV-1 Tat specific fact...    29   9.8  
AK097639-1|BAC05129.1|  126|Homo sapiens protein ( Homo sapiens ...    29   9.8  

>AB209303-1|BAD92540.1|  758|Homo sapiens HIV TAT specific factor 1
           variant protein.
          Length = 758

 Score = 29.9 bits (64), Expect = 7.4
 Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
 Frame = +1

Query: 397 EDEPRDGYEEIVNK-FEKNIEEECDVEN-----ILETAAKHGHFIDIKVEPAEEEDTWSQ 558
           E   ++ +E I++K  E+N  E  + E+     +L+       F +   E  EEEDT+ +
Sbjct: 580 EGSEKELHENILDKELEENDSENSEFEDDGSEKVLDEEGSEREFDEDSDEKEEEEDTYEK 639

Query: 559 IDYDYCDIKTENEDY 603
           +  D  D K E+E+Y
Sbjct: 640 VFDDESDEK-EDEEY 653


>Z97632-4|CAB10730.1|  755|Homo sapiens HIV-1 Tat specific factor 1
           protein.
          Length = 755

 Score = 29.5 bits (63), Expect = 9.8
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +1

Query: 421 EEIVNKFEKNIEEECD-VENILETAAKHGHFIDIKVEPAEEEDTWSQIDYDYCDIKTENE 597
           +E+     +N E E D  E +L+       F +   E  EEEDT+ ++  D  D K E+E
Sbjct: 590 KELEENDSENSEFEDDGSEKVLDEEGSEREFDEDSDEKEEEEDTYEKVFDDESDEK-EDE 648

Query: 598 DY 603
           +Y
Sbjct: 649 EY 650


>U76992-1|AAB18823.1|  754|Homo sapiens Tat-SF1 protein.
          Length = 754

 Score = 29.5 bits (63), Expect = 9.8
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +1

Query: 421 EEIVNKFEKNIEEECD-VENILETAAKHGHFIDIKVEPAEEEDTWSQIDYDYCDIKTENE 597
           +E+     +N E E D  E +L+       F +   E  EEEDT+ ++  D  D K E+E
Sbjct: 589 KELEENDSENSEFEDDGSEKVLDEEGSEREFDEDSDEKEEEEDTYEKVFDDESDEK-EDE 647

Query: 598 DY 603
           +Y
Sbjct: 648 EY 649


>BT006886-1|AAP35532.1|  755|Homo sapiens HIV TAT specific factor 1
           protein.
          Length = 755

 Score = 29.5 bits (63), Expect = 9.8
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +1

Query: 421 EEIVNKFEKNIEEECD-VENILETAAKHGHFIDIKVEPAEEEDTWSQIDYDYCDIKTENE 597
           +E+     +N E E D  E +L+       F +   E  EEEDT+ ++  D  D K E+E
Sbjct: 590 KELEENDSENSEFEDDGSEKVLDEEGSEREFDEDSDEKEEEEDTYEKVFDDESDEK-EDE 648

Query: 598 DY 603
           +Y
Sbjct: 649 EY 650


>BC009896-1|AAH09896.1|  755|Homo sapiens HIV-1 Tat specific factor
           1 protein.
          Length = 755

 Score = 29.5 bits (63), Expect = 9.8
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +1

Query: 421 EEIVNKFEKNIEEECD-VENILETAAKHGHFIDIKVEPAEEEDTWSQIDYDYCDIKTENE 597
           +E+     +N E E D  E +L+       F +   E  EEEDT+ ++  D  D K E+E
Sbjct: 590 KELEENDSENSEFEDDGSEKVLDEEGSEREFDEDSDEKEEEEDTYEKVFDDESDEK-EDE 648

Query: 598 DY 603
           +Y
Sbjct: 649 EY 650


>AK097639-1|BAC05129.1|  126|Homo sapiens protein ( Homo sapiens
           cDNA FLJ40320 fis, clone TESTI2030770. ).
          Length = 126

 Score = 29.5 bits (63), Expect = 9.8
 Identities = 19/63 (30%), Positives = 30/63 (47%)
 Frame = -1

Query: 465 TLLFYIFFKFIYNLFVPVSGFIFNDNQDHVVFSFNISFVHFYCVKFEHVLNLAFGHSNFV 286
           + L ++FF   Y+L+V VS   F     H+   F + + +FY V   ++ N       FV
Sbjct: 17  SFLHFVFFLAFYSLYVCVS---FCQAVIHMHTCFFLIWENFYVVLMGNIFNTPLSLPKFV 73

Query: 285 LLL 277
            LL
Sbjct: 74  FLL 76


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,522,269
Number of Sequences: 237096
Number of extensions: 1603138
Number of successful extensions: 3538
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3533
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6522878360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)