Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2i07
         (717 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    25   0.71 
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    23   3.8  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   3.8  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    22   6.7  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   8.8  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          21   8.8  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   8.8  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   8.8  

>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 25.0 bits (52), Expect = 0.71
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
 Frame = +3

Query: 507 RSSRRLYLISQERFVKCSKRDAQKQALTRATRYSRYTTPKERTGRHYRTDT--RRFRIPP 680
           R   R Y     R+ K    + +K+ L   T   RY+  +ER  + Y+ +   R++R   
Sbjct: 239 RDRNREYKKKDRRYEKL--HNEKKKLLEERTSRKRYSRSREREQKSYKNENSYRKYRETS 296

Query: 681 PARGSQSRSDR 713
             R S+ R +R
Sbjct: 297 KER-SRDRRER 306


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
 Frame = +3

Query: 507 RSSRRLYLISQERFVKCSKRDAQKQALTRATRYSRYTTPKERTGRHYRTDT--RRFRIPP 680
           R   R Y     ++ K    + +++ L   T   RY+  +ER  R Y+ +   R++R   
Sbjct: 239 RDRNREYRKKDRQYEKL--HNEKEKLLEERTSRKRYSRSREREQRSYKNENSYRKYRETS 296

Query: 681 PARGSQSRSDR 713
             R S+ R +R
Sbjct: 297 KER-SRDRIER 306


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -2

Query: 683 WWWNSKPSRI 654
           WWWN K S +
Sbjct: 366 WWWNMKISNL 375


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 13/55 (23%), Positives = 26/55 (47%)
 Frame = +3

Query: 507 RSSRRLYLISQERFVKCSKRDAQKQALTRATRYSRYTTPKERTGRHYRTDTRRFR 671
           R   R Y     ++ K    + +++ L   T + RY+  +ER  + Y+ + R +R
Sbjct: 239 RDRNREYRKKDRQYEKL--HNEKEKFLEERTSHKRYSRSREREQKSYKNE-REYR 290


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = +2

Query: 464 RVRQSPSNGVSTASPQQPTPVPHQPGK 544
           R+  +PS+  S++ P +      QP K
Sbjct: 516 RIASAPSSSTSSSPPAKGAAAAGQPSK 542


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 10/36 (27%), Positives = 15/36 (41%)
 Frame = +3

Query: 558 SKRDAQKQALTRATRYSRYTTPKERTGRHYRTDTRR 665
           S R   +     ++ +SRY   +   G  YR D  R
Sbjct: 216 SLRSRSRSFQRTSSCHSRYEDSRHEDGNSYRNDGER 251


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +2

Query: 191 VFNGYVYKSRIA 226
           V+NGY+Y+  +A
Sbjct: 437 VYNGYIYQKMVA 448


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +2

Query: 191 VFNGYVYKSRIA 226
           V+NGY+Y+  +A
Sbjct: 437 VYNGYIYQKMVA 448


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,415
Number of Sequences: 438
Number of extensions: 3967
Number of successful extensions: 17
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)