Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc2h23
(671 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q17AL1 Cluster: U3 small nucleolar ribonucleoprotein pr... 287 2e-76
UniRef50_Q9NV31 Cluster: U3 small nucleolar ribonucleoprotein pr... 248 1e-64
UniRef50_P32899 Cluster: U3 small nucleolar ribonucleoprotein pr... 213 4e-54
UniRef50_O01513 Cluster: Putative 40S ribosomal protein S4-like;... 191 1e-47
UniRef50_Q4UC11 Cluster: U3 small nucleolar ribonucleoprotein or... 177 2e-43
UniRef50_Q01688 Cluster: Putative 40S ribosomal protein S4-like;... 169 5e-41
UniRef50_A2E3D0 Cluster: S4 domain containing protein; n=1; Tric... 167 2e-40
UniRef50_Q8SRU8 Cluster: U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN; n... 167 3e-40
UniRef50_A7AVJ4 Cluster: U3 small nucleolar ribonucleoprotein pr... 166 5e-40
UniRef50_UPI0000498936 Cluster: U3 small nucleolar ribonucleopro... 157 2e-37
UniRef50_Q8IKM0 Cluster: Ribosomal protein S4, putative; n=1; Pl... 153 3e-36
UniRef50_UPI0000E4A461 Cluster: PREDICTED: similar to MGC69249 p... 151 1e-35
UniRef50_Q382E4 Cluster: U3 small nucleolar ribonucleoprotein pr... 150 3e-35
UniRef50_A2XYL0 Cluster: Putative uncharacterized protein; n=2; ... 147 2e-34
UniRef50_Q54XG2 Cluster: Putative uncharacterized protein; n=1; ... 145 1e-33
UniRef50_Q7R0S4 Cluster: GLP_186_71509_70955; n=1; Giardia lambl... 132 7e-30
UniRef50_Q74NF7 Cluster: 30S ribosomal protein S4P; n=5; Archaea... 69 8e-11
UniRef50_Q2NFZ4 Cluster: 30S ribosomal protein S4P; n=3; Methano... 62 1e-08
UniRef50_Q96YV8 Cluster: 30S ribosomal protein S4P; n=2; Sulfolo... 59 8e-08
UniRef50_Q0W1V5 Cluster: 30S ribosomal protein S4P; n=1; uncultu... 54 2e-06
UniRef50_O15612 Cluster: 40S ribosomal protein S9; n=2; Entamoeb... 54 4e-06
UniRef50_P46781 Cluster: 40S ribosomal protein S9; n=181; Eukary... 49 9e-05
UniRef50_Q8ZTV1 Cluster: 30S ribosomal protein S4P; n=5; Thermop... 49 9e-05
UniRef50_P54020 Cluster: 30S ribosomal protein S4P; n=12; Archae... 49 1e-04
UniRef50_A6UW05 Cluster: Ribosomal protein S4; n=1; Methanococcu... 48 2e-04
UniRef50_Q97B95 Cluster: 30S ribosomal protein S4P; n=5; Archaea... 47 4e-04
UniRef50_A0RY02 Cluster: 30S ribosomal protein S4P; n=3; Thermop... 47 4e-04
UniRef50_Q9HQJ6 Cluster: 30S ribosomal protein S4P; n=3; Halobac... 46 0.001
UniRef50_Q8PV18 Cluster: 30S ribosomal protein S4P; n=8; Euryarc... 45 0.001
UniRef50_A2F6M0 Cluster: Putative uncharacterized protein; n=1; ... 45 0.002
UniRef50_A7IAH7 Cluster: Ribosomal protein S4; n=1; Candidatus M... 45 0.002
UniRef50_A0SNY6 Cluster: Ribosomal protein small subunit S9; n=1... 45 0.002
UniRef50_Q3LWD1 Cluster: Ribosomal protein S9; n=1; Bigelowiella... 44 0.003
UniRef50_A5K435 Cluster: Proteosome subunit alpha type 1, putati... 41 0.024
UniRef50_Q5KLM6 Cluster: Nam9 protein, mitochondrial, putative; ... 40 0.055
UniRef50_Q2FT97 Cluster: 30S ribosomal protein S4P; n=2; Methano... 38 0.17
UniRef50_Q2SR74 Cluster: Putative uncharacterized protein; n=2; ... 36 0.67
UniRef50_Q2WCV5 Cluster: Putative insecticidal toxin complex pro... 36 0.67
UniRef50_A6UUX2 Cluster: SMC domain protein; n=1; Methanococcus ... 36 0.67
UniRef50_Q5A195 Cluster: Putative uncharacterized protein NUM1; ... 36 0.89
UniRef50_A5N224 Cluster: Putative uncharacterized protein; n=1; ... 36 1.2
UniRef50_Q3ZX00 Cluster: DNA-directed RNA polymerase subunit bet... 36 1.2
UniRef50_Q8G5G4 Cluster: Hemolysin-like protein with S4 domain f... 35 1.6
UniRef50_A7GMF9 Cluster: Putative uncharacterized protein precur... 35 1.6
UniRef50_Q235N8 Cluster: Putative uncharacterized protein; n=1; ... 34 2.7
UniRef50_Q7V395 Cluster: tRNA modification GTPase trmE; n=5; Pro... 34 2.7
UniRef50_Q4SUE8 Cluster: Chromosome undetermined SCAF13964, whol... 34 3.6
UniRef50_A6WGS0 Cluster: Putative uncharacterized protein; n=1; ... 34 3.6
UniRef50_A6LZM3 Cluster: Putative uncharacterized protein; n=1; ... 34 3.6
UniRef50_P39596 Cluster: UPF0409 protein ywbM precursor; n=2; Ba... 34 3.6
UniRef50_UPI0000499A36 Cluster: DnaJ family protein; n=1; Entamo... 33 4.8
UniRef50_Q8JFV0 Cluster: Tyrosine-protein kinase receptor; n=5; ... 33 4.8
UniRef50_Q892T4 Cluster: Putative uncharacterized protein; n=1; ... 33 4.8
UniRef50_Q5NYV8 Cluster: Endonuclease; n=1; Azoarcus sp. EbN1|Re... 33 4.8
UniRef50_Q31HK1 Cluster: Diguanylate cyclase/phosphodiesterase (... 33 4.8
UniRef50_A0EI16 Cluster: Chromosome undetermined scaffold_98, wh... 33 4.8
UniRef50_Q9WYA2 Cluster: Pseudouridine synthase; n=3; Bacteria|R... 33 6.3
UniRef50_A3N3H1 Cluster: Putative uncharacterized protein; n=2; ... 33 6.3
UniRef50_A7QB66 Cluster: Chromosome chr4 scaffold_73, whole geno... 33 6.3
UniRef50_Q54G05 Cluster: Putative uncharacterized protein; n=1; ... 33 6.3
UniRef50_Q26216 Cluster: Rhoptry protein; n=69; Plasmodium (Vinc... 33 6.3
UniRef50_Q8SRZ3 Cluster: ACTIN-RELATED PROTEIN; n=1; Encephalito... 33 6.3
UniRef50_Q1Q2D3 Cluster: Putative uncharacterized protein; n=1; ... 33 8.3
UniRef50_A6DF71 Cluster: Putative uncharacterized protein; n=1; ... 33 8.3
UniRef50_A7Q0G6 Cluster: Chromosome chr7 scaffold_42, whole geno... 33 8.3
UniRef50_Q5ILJ7 Cluster: Ribosomal protein S4; n=1; Polysphondyl... 33 8.3
UniRef50_P92166 Cluster: Putative uncharacterized protein; n=2; ... 33 8.3
UniRef50_A2D8C6 Cluster: Dynein heavy chain family protein; n=2;... 33 8.3
UniRef50_Q8TYA5 Cluster: Predicted RNA-binding protein containin... 33 8.3
UniRef50_Q18J31 Cluster: Probable DNA repair and recombination p... 33 8.3
>UniRef50_Q17AL1 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3 (U3 snoRNP protein IMP3), putative; n=3;
Coelomata|Rep: U3 small nucleolar ribonucleoprotein
protein IMP3 (U3 snoRNP protein IMP3), putative - Aedes
aegypti (Yellowfever mosquito)
Length = 181
Score = 287 bits (704), Expect = 2e-76
Identities = 131/181 (72%), Positives = 157/181 (86%)
Frame = +3
Query: 111 MVRKLKFHEGKLLKKVDFISWKLDNNISEVKVMKKFCIQKREDYTKYNKLSRDIRELANK 290
MVRKLKFHE KLLKKVDF +WK NN++E+K+M+++ +QKREDYT YNKLSR+IREL NK
Sbjct: 1 MVRKLKFHEQKLLKKVDFFNWKETNNLNEMKIMRRYNVQKREDYTTYNKLSRNIRELTNK 60
Query: 291 IKDLDPNNEFRTESSAQLLEKLYQIGLIPTRWDLALATNVSASSFCRRRLPVLMVRNKMS 470
I ++D + FRTE S LLEKLY +GLIPT+WDL A+ +SASSFCRRRLPV+++RNKMS
Sbjct: 61 IAEVDAKHPFRTEMSGLLLEKLYVLGLIPTKWDLENASKISASSFCRRRLPVVLLRNKMS 120
Query: 471 ETIKEATKFIEQGHVRVGPEVVKDPAFLVNRSLEDFVTWVDGSAIRKHVLEYNEMRDDFD 650
E +K AT+ IE GHVRVG +VVKDPAFLV R+LEDFVTWVDGSAIRKHVLEYN+MRDDF+
Sbjct: 121 ENLKHATQMIEHGHVRVGTDVVKDPAFLVPRTLEDFVTWVDGSAIRKHVLEYNDMRDDFE 180
Query: 651 M 653
M
Sbjct: 181 M 181
>UniRef50_Q9NV31 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3; n=13; Euteleostomi|Rep: U3 small nucleolar
ribonucleoprotein protein IMP3 - Homo sapiens (Human)
Length = 184
Score = 248 bits (606), Expect = 1e-64
Identities = 109/182 (59%), Positives = 152/182 (83%), Gaps = 1/182 (0%)
Frame = +3
Query: 111 MVRKLKFHEGKLLKKVDFISWKL-DNNISEVKVMKKFCIQKREDYTKYNKLSRDIRELAN 287
MVRKLKFHE KLLK+VDF++W++ D+N+ E++V++++ +Q+REDYT+YN+LSR +RELA
Sbjct: 1 MVRKLKFHEQKLLKQVDFLNWEVTDHNLHELRVLRRYRLQRREDYTRYNQLSRAVRELAR 60
Query: 288 KIKDLDPNNEFRTESSAQLLEKLYQIGLIPTRWDLALATNVSASSFCRRRLPVLMVRNKM 467
+++DL ++FR +SA LL+KLY +GL+PTR L L V+ASSFCRRRLP ++++ +M
Sbjct: 61 RLRDLPERDQFRVRASAALLDKLYALGLVPTRGSLELCDFVTASSFCRRRLPTVLLKLRM 120
Query: 468 SETIKEATKFIEQGHVRVGPEVVKDPAFLVNRSLEDFVTWVDGSAIRKHVLEYNEMRDDF 647
++ ++ A F+EQGHVRVGP+VV DPAFLV RS+EDFVTWVD S I++HVLEYNE RDDF
Sbjct: 121 AQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEERDDF 180
Query: 648 DM 653
D+
Sbjct: 181 DL 182
>UniRef50_P32899 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3; n=34; Eukaryota|Rep: U3 small nucleolar
ribonucleoprotein protein IMP3 - Saccharomyces
cerevisiae (Baker's yeast)
Length = 183
Score = 213 bits (519), Expect = 4e-54
Identities = 100/181 (55%), Positives = 131/181 (72%), Gaps = 1/181 (0%)
Frame = +3
Query: 111 MVRKLKFHEGKLLKKVDFISWKLDNNISEVKVMKKFCIQKREDYTKYNKLSRDIRELANK 290
MVRKLK HE KLLKKVDF+ WK D + +VM+ + IQ REDY KYN++ DIR LANK
Sbjct: 1 MVRKLKHHEQKLLKKVDFLEWKQDQGHRDTQVMRTYHIQNREDYHKYNRICGDIRRLANK 60
Query: 291 IKDLDPNNEFRTESSAQLLEKLYQIGLIPTRWDLA-LATNVSASSFCRRRLPVLMVRNKM 467
+ L P + FR + LL+KLY +G++ T+ ++ L V+ S+ CRRRLPV+M R KM
Sbjct: 61 LSLLPPTDPFRRKHEQLLLDKLYAMGVLTTKSKISDLENKVTVSAICRRRLPVIMHRLKM 120
Query: 468 SETIKEATKFIEQGHVRVGPEVVKDPAFLVNRSLEDFVTWVDGSAIRKHVLEYNEMRDDF 647
+ETI++A KFIEQGHVRVGP ++ DPA+LV R++ED+VTWVD S I+K +L Y DDF
Sbjct: 121 AETIQDAVKFIEQGHVRVGPNLINDPAYLVTRNMEDYVTWVDNSKIKKTLLRYRNQIDDF 180
Query: 648 D 650
D
Sbjct: 181 D 181
>UniRef50_O01513 Cluster: Putative 40S ribosomal protein S4-like;
n=4; Bilateria|Rep: Putative 40S ribosomal protein
S4-like - Caenorhabditis elegans
Length = 183
Score = 191 bits (466), Expect = 1e-47
Identities = 88/182 (48%), Positives = 125/182 (68%)
Frame = +3
Query: 111 MVRKLKFHEGKLLKKVDFISWKLDNNISEVKVMKKFCIQKREDYTKYNKLSRDIRELANK 290
MVRKLK HE KLLKK DF+SW++D + +++KF ++KRE Y YN L+ RE+A+
Sbjct: 1 MVRKLKTHEQKLLKKTDFMSWQVDQQGKQGDMLRKFYVKKREHYALYNTLAAKSREVADL 60
Query: 291 IKDLDPNNEFRTESSAQLLEKLYQIGLIPTRWDLALATNVSASSFCRRRLPVLMVRNKMS 470
IK+L ++ FR++ + +L K Y GL+PT L V+ +SF RRRLPV+M M
Sbjct: 61 IKNLSESDPFRSKCTEDMLTKFYAAGLVPTSDTLERIGKVTGASFARRRLPVVMRNIGMC 120
Query: 471 ETIKEATKFIEQGHVRVGPEVVKDPAFLVNRSLEDFVTWVDGSAIRKHVLEYNEMRDDFD 650
E++K A+ +EQGHVR+G ++V DPAF+V RS ED +TW S I+KHV++YN RDDFD
Sbjct: 121 ESVKTASDLVEQGHVRIGTKLVTDPAFMVTRSSEDMITWTKASKIKKHVMDYNNTRDDFD 180
Query: 651 ML 656
++
Sbjct: 181 LM 182
>UniRef50_Q4UC11 Cluster: U3 small nucleolar ribonucleoprotein or
40S ribosomal protein S4-like, putative; n=9;
Eukaryota|Rep: U3 small nucleolar ribonucleoprotein or
40S ribosomal protein S4-like, putative - Theileria
annulata
Length = 189
Score = 177 bits (431), Expect = 2e-43
Identities = 84/187 (44%), Positives = 126/187 (67%), Gaps = 6/187 (3%)
Frame = +3
Query: 114 VRKLKFHEGKLLKKVDFISWKLDNNISEVKVMKKFCIQKREDYTKYNKLSRDIRELANKI 293
+RKLK+HE KLLKK +F WK N E K++ K+ IQK EDY KYNKL +I +L N++
Sbjct: 1 MRKLKYHEQKLLKKTNFFDWKNVNARRETKIINKYMIQKPEDYHKYNKLVGNITKLTNEL 60
Query: 294 KDLDPNNEFRTESSAQLLEKLYQIGLIPTRWDLALATNVSASSFCRRRLPVLMVRNKMSE 473
+ L ++ FR + + LLEKLYQ+GLI T+ +L + +SAS FCRRRL V++V K +
Sbjct: 61 RKLPEDDAFRIKMTDDLLEKLYQMGLISTKGNLEICERLSASVFCRRRLAVVLVTRKFCQ 120
Query: 474 TIKEATKFIEQGH------VRVGPEVVKDPAFLVNRSLEDFVTWVDGSAIRKHVLEYNEM 635
+ +A FIEQGH ++VG ++V +PA+ + R++ED +TW GS I++ + E++
Sbjct: 121 HLTQAITFIEQGHLMYGIDIKVGMDIVNNPAYHITRNMEDHITWSQGSKIKEKIAEFSGT 180
Query: 636 RDDFDML 656
DDF++L
Sbjct: 181 TDDFELL 187
>UniRef50_Q01688 Cluster: Putative 40S ribosomal protein S4-like;
n=21; Eukaryota|Rep: Putative 40S ribosomal protein
S4-like - Pneumocystis carinii
Length = 169
Score = 169 bits (411), Expect = 5e-41
Identities = 83/169 (49%), Positives = 118/169 (69%), Gaps = 2/169 (1%)
Frame = +3
Query: 114 VRKLKFHEGKLLKKVDFISWKLD-NNISEVKVMKKFCIQKREDYTKYNKLSRDIRELANK 290
+RKLK+HE KLL K DF+++K D NN +V V++++ I +REDY KYN+L + +ANK
Sbjct: 1 MRKLKYHEKKLLTKHDFLNYKKDDNNHRDVNVIRRYHIPQREDYFKYNQLVGLLLGIANK 60
Query: 291 IKDLDPNNEFRTESSAQLLEKLYQIGLIPTRWDLALATN-VSASSFCRRRLPVLMVRNKM 467
+ L+P + F LL KL+ + L+ + L+ N ++ S+FCRRRLPV+M R KM
Sbjct: 61 LSLLEPTDSFGNLHKKMLLGKLFDMALLTSTPKLSDVENKLTVSAFCRRRLPVVMCRLKM 120
Query: 468 SETIKEATKFIEQGHVRVGPEVVKDPAFLVNRSLEDFVTWVDGSAIRKH 614
ET+ + K++E GHVRVGPEV+ DPAF V R++EDFVTWVD S IR++
Sbjct: 121 CETVSTSVKYVEHGHVRVGPEVITDPAFFVTRNMEDFVTWVDSSKIRRN 169
>UniRef50_A2E3D0 Cluster: S4 domain containing protein; n=1;
Trichomonas vaginalis G3|Rep: S4 domain containing
protein - Trichomonas vaginalis G3
Length = 182
Score = 167 bits (407), Expect = 2e-40
Identities = 73/182 (40%), Positives = 118/182 (64%)
Frame = +3
Query: 111 MVRKLKFHEGKLLKKVDFISWKLDNNISEVKVMKKFCIQKREDYTKYNKLSRDIRELANK 290
M RKLK+HE KLLKK + WK +NN+ +V+ +C+ E+Y +YN+L I+ N
Sbjct: 1 MGRKLKYHEQKLLKKTNLYHWKGENNLRSGQVVGIYCLDNSEEYHQYNRLVGKIQRFTNT 60
Query: 291 IKDLDPNNEFRTESSAQLLEKLYQIGLIPTRWDLALATNVSASSFCRRRLPVLMVRNKMS 470
++ + P ++ R + + Q ++++Y++G+I T L+ ++ + C+RRLPV+MV K
Sbjct: 61 LRQMGPEDKVRIDLTKQFVDRVYKLGIIETP-QLSECEKINVVAICKRRLPVIMVNLKFC 119
Query: 471 ETIKEATKFIEQGHVRVGPEVVKDPAFLVNRSLEDFVTWVDGSAIRKHVLEYNEMRDDFD 650
+ I EA K + QGHVR+GP+VV +PA LV++ +ED++ W GS I HV ++N+ DDFD
Sbjct: 120 QRISEADKLVRQGHVRIGPDVVTNPATLVSKEMEDYINWAHGSKIEAHVKKFNQQYDDFD 179
Query: 651 ML 656
L
Sbjct: 180 NL 181
>UniRef50_Q8SRU8 Cluster: U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN; n=1;
Encephalitozoon cuniculi|Rep: U3 SMALL NUCLEOLAR
RIBONUCLEOPROTEIN - Encephalitozoon cuniculi
Length = 180
Score = 167 bits (405), Expect = 3e-40
Identities = 77/179 (43%), Positives = 124/179 (69%)
Frame = +3
Query: 114 VRKLKFHEGKLLKKVDFISWKLDNNISEVKVMKKFCIQKREDYTKYNKLSRDIRELANKI 293
+R+LKFHE KLLK+V+F+ WK N E + K+ ++ RE+YTKY+++ +R+LA +
Sbjct: 1 MRELKFHEKKLLKQVNFLEWKNTNTAREHLAIAKYGLRDREEYTKYSRIVGKVRKLAEAL 60
Query: 294 KDLDPNNEFRTESSAQLLEKLYQIGLIPTRWDLALATNVSASSFCRRRLPVLMVRNKMSE 473
L ++ RT + +L+ +LY +G+I R L T V+ SSFC RRLP++M R +M
Sbjct: 61 ARLKESDPVRTTITKKLVGRLYSVGVIKNR-KLVDCTKVTVSSFCERRLPMVMKRIRMVP 119
Query: 474 TIKEATKFIEQGHVRVGPEVVKDPAFLVNRSLEDFVTWVDGSAIRKHVLEYNEMRDDFD 650
+ K+AT+F+E GHVR+G +VV DP+ ++++++EDFV+WVD S I++ + E+N DDF+
Sbjct: 120 SFKDATRFVEHGHVRLGSKVVYDPSTIISKAMEDFVSWVDKSKIKRKIDEFNGELDDFN 178
>UniRef50_A7AVJ4 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3-like protein; n=1; Babesia bovis|Rep: U3
small nucleolar ribonucleoprotein protein IMP3-like
protein - Babesia bovis
Length = 195
Score = 166 bits (403), Expect = 5e-40
Identities = 83/193 (43%), Positives = 124/193 (64%), Gaps = 12/193 (6%)
Frame = +3
Query: 114 VRKLKFHEGKLLKKVDFISWKLDNNISEVKVMKKFCIQKREDYTKYNKLSRDIRELANKI 293
+R+LK+HE KLLKKV+ WK + E K+++++ IQ E+Y KYNKL I +L +++
Sbjct: 1 MRQLKYHEQKLLKKVNIYDWKRVDTHRETKILRRYYIQDPEEYHKYNKLVGRITKLVSEL 60
Query: 294 KDLDPNNEFRTESSAQLLEKLY------------QIGLIPTRWDLALATNVSASSFCRRR 437
+ L ++ FR + + L+EKLY Q+GLI R +L L +SAS FCRRR
Sbjct: 61 RKLPEDDSFRIKMTDNLMEKLYVFKMMYIALSRYQMGLISVRGNLELCERLSASVFCRRR 120
Query: 438 LPVLMVRNKMSETIKEATKFIEQGHVRVGPEVVKDPAFLVNRSLEDFVTWVDGSAIRKHV 617
L ++V+ K E +K+A +IEQGH+RVG +VV PA+ V R LED +TW GS I++ V
Sbjct: 121 LATVLVQRKFCEHLKQAVTYIEQGHIRVGLDVVNIPAYHVTRELEDHITWAQGSKIKEKV 180
Query: 618 LEYNEMRDDFDML 656
+++ RDDF++L
Sbjct: 181 VDFTGARDDFELL 193
>UniRef50_UPI0000498936 Cluster: U3 small nucleolar
ribonucleoprotein subunit; n=2; Entamoeba histolytica
HM-1:IMSS|Rep: U3 small nucleolar ribonucleoprotein
subunit - Entamoeba histolytica HM-1:IMSS
Length = 186
Score = 157 bits (381), Expect = 2e-37
Identities = 71/183 (38%), Positives = 118/183 (64%), Gaps = 2/183 (1%)
Frame = +3
Query: 111 MVRKLKFHEGKLLKKVDFISWKLDNNISEVKVMKKFCIQKREDYTKYNKLSRDIRELANK 290
MVRKLK+HE KLLKKVDF+ W+ D I + +M +F I ++ Y K ++R+L+
Sbjct: 1 MVRKLKYHESKLLKKVDFVDWRRDKGIRKAGIMARFHIHDESEFEAYEKAVLNLRKLSFL 60
Query: 291 IKDLDPNNEFRTESSAQLLEKLYQIGLI--PTRWDLALATNVSASSFCRRRLPVLMVRNK 464
++ L ++ FR + ++ ++LY +G+I P + L + + AS FCRRRL +++ K
Sbjct: 61 LQKLPKDDAFRMVLTKRICDRLYDLGVIILPEK-GLHMIDVIHASDFCRRRLAIVVKAKK 119
Query: 465 MSETIKEATKFIEQGHVRVGPEVVKDPAFLVNRSLEDFVTWVDGSAIRKHVLEYNEMRDD 644
M + +A I+QGH++VGP+V+++PA++V+R EDFVTW D S +R+ + E+ DD
Sbjct: 120 MVTDVTQAETLIQQGHIKVGPDVIRNPAYIVSRKKEDFVTWDDESKMRRKINEFKSQEDD 179
Query: 645 FDM 653
+D+
Sbjct: 180 YDL 182
>UniRef50_Q8IKM0 Cluster: Ribosomal protein S4, putative; n=1;
Plasmodium falciparum 3D7|Rep: Ribosomal protein S4,
putative - Plasmodium falciparum (isolate 3D7)
Length = 159
Score = 153 bits (372), Expect = 3e-36
Identities = 76/181 (41%), Positives = 113/181 (62%)
Frame = +3
Query: 114 VRKLKFHEGKLLKKVDFISWKLDNNISEVKVMKKFCIQKREDYTKYNKLSRDIRELANKI 293
+RKLK+HE KLLKKV+F WK NN+ EVKV++K+ IQ REDYTKYNK+ I +L +K+
Sbjct: 1 MRKLKYHEQKLLKKVNFYDWKRTNNVREVKVLRKYVIQNREDYTKYNKICGYITKLVSKL 60
Query: 294 KDLDPNNEFRTESSAQLLEKLYQIGLIPTRWDLALATNVSASSFCRRRLPVLMVRNKMSE 473
+ L+P + ++ SSFCRRRL VL+ R K +
Sbjct: 61 R------------------------LLPENDEFPECEKITVSSFCRRRLAVLLFRLKFVQ 96
Query: 474 TIKEATKFIEQGHVRVGPEVVKDPAFLVNRSLEDFVTWVDGSAIRKHVLEYNEMRDDFDM 653
TIK A +I+ G++R+G V+ +P+F +NR++ED + W DGS I KH+ ++ E +DD+++
Sbjct: 97 TIKLAITYIQHGNIRIGNNVINNPSFHINRNMEDHIKWADGSKILKHIQKHRESKDDYEL 156
Query: 654 L 656
L
Sbjct: 157 L 157
>UniRef50_UPI0000E4A461 Cluster: PREDICTED: similar to MGC69249
protein; n=2; Strongylocentrotus purpuratus|Rep:
PREDICTED: similar to MGC69249 protein -
Strongylocentrotus purpuratus
Length = 145
Score = 151 bits (366), Expect = 1e-35
Identities = 67/107 (62%), Positives = 89/107 (83%)
Frame = +3
Query: 246 KYNKLSRDIRELANKIKDLDPNNEFRTESSAQLLEKLYQIGLIPTRWDLALATNVSASSF 425
KYNKLSR +R LANKIK LD + FR + ++Q+L+KLY +G++PT+ +LAL NVSASSF
Sbjct: 2 KYNKLSRHVRTLANKIKQLDSKDPFRNQCTSQMLKKLYNMGIVPTKQNLALCDNVSASSF 61
Query: 426 CRRRLPVLMVRNKMSETIKEATKFIEQGHVRVGPEVVKDPAFLVNRS 566
CRRRLPV+MV+ KM+ET++ A KF++ GH+RVGPE+V DPAFLV R+
Sbjct: 62 CRRRLPVVMVKIKMAETVESAVKFVQHGHIRVGPELVLDPAFLVTRT 108
>UniRef50_Q382E4 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3, putative; n=6; Trypanosomatidae|Rep: U3
small nucleolar ribonucleoprotein protein IMP3, putative
- Trypanosoma brucei
Length = 226
Score = 150 bits (363), Expect = 3e-35
Identities = 74/178 (41%), Positives = 111/178 (62%)
Frame = +3
Query: 117 RKLKFHEGKLLKKVDFISWKLDNNISEVKVMKKFCIQKREDYTKYNKLSRDIRELANKIK 296
R LK+HE KLL+K DF+ + DN E + K+ ++ REDY +Y +L IR+L ++
Sbjct: 50 RTLKYHEKKLLRKHDFMQYPQDN-WHEPFCITKYHLEDREDYRRYLRLVGLIRQLLTHLR 108
Query: 297 DLDPNNEFRTESSAQLLEKLYQIGLIPTRWDLALATNVSASSFCRRRLPVLMVRNKMSET 476
L +++ R + + Q+L+KLY +GLI + LA V FC+RRLP ++ M+
Sbjct: 109 YLPADSKIRIQITQQILDKLYAMGLINEKLGLAEVDKVGVEVFCKRRLPTVLRDLNMAPN 168
Query: 477 IKEATKFIEQGHVRVGPEVVKDPAFLVNRSLEDFVTWVDGSAIRKHVLEYNEMRDDFD 650
K A F+ GHVRVG ++DPAFLV R LED+VTW+ GS +++HV +N RDD++
Sbjct: 169 CKIAADFVHHGHVRVGTSQIRDPAFLVPRDLEDYVTWMPGSKVKQHVDTFNVQRDDYE 226
>UniRef50_A2XYL0 Cluster: Putative uncharacterized protein; n=2;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. indica (Rice)
Length = 157
Score = 147 bits (356), Expect = 2e-34
Identities = 77/181 (42%), Positives = 111/181 (61%)
Frame = +3
Query: 114 VRKLKFHEGKLLKKVDFISWKLDNNISEVKVMKKFCIQKREDYTKYNKLSRDIRELANKI 293
+RKL+FHE KLLKK +F+ +K + + V +++ + +R+DY KYN + +++L N I
Sbjct: 1 MRKLRFHEQKLLKKTNFLDFKREKGHRDAIVTQRYLLVERDDYKKYNGICLMVQKLVNII 60
Query: 294 KDLDPNNEFRTESSAQLLEKLYQIGLIPTRWDLALATNVSASSFCRRRLPVLMVRNKMSE 473
K +DP + +R E + LL+KL RRL +MV+ K +E
Sbjct: 61 KQMDPRDPYRAEMTDMLLDKL-------------------------RRLATVMVKLKFAE 95
Query: 474 TIKEATKFIEQGHVRVGPEVVKDPAFLVNRSLEDFVTWVDGSAIRKHVLEYNEMRDDFDM 653
+KEA +I+QGHVRVGPE V DPAFLV R++EDF+TWVD S I++ V EYN DDFD
Sbjct: 96 HLKEAVTYIQQGHVRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVQEYNGELDDFDA 155
Query: 654 L 656
+
Sbjct: 156 M 156
>UniRef50_Q54XG2 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 177
Score = 145 bits (351), Expect = 1e-33
Identities = 69/172 (40%), Positives = 109/172 (63%)
Frame = +3
Query: 117 RKLKFHEGKLLKKVDFISWKLDNNISEVKVMKKFCIQKREDYTKYNKLSRDIRELANKIK 296
RKLK+HE KLLKK +F ++ +N +V+ + +F ++ +E+Y +Y KL + + +I
Sbjct: 5 RKLKYHEEKLLKKTNFKHYRRENQ-KDVENIGRFGLKGKEEYAEYTKLVAQYKHVLKEIS 63
Query: 297 DLDPNNEFRTESSAQLLEKLYQIGLIPTRWDLALATNVSASSFCRRRLPVLMVRNKMSET 476
DL + + + + L EKLY +G+I + L V+ASSFCRRR V++V+ K +E
Sbjct: 64 DLSDQDPVKQKLLSDLSEKLYNMGVIDLKQPSELV-KVNASSFCRRRAVVMLVKKKFAEH 122
Query: 477 IKEATKFIEQGHVRVGPEVVKDPAFLVNRSLEDFVTWVDGSAIRKHVLEYNE 632
+ +A + GHVR+GPE ++DPA ++ R ED +TWVD S ++K V EYNE
Sbjct: 123 LTQAFGLLSHGHVRIGPETIQDPALIITRKSEDLLTWVDNSTMKKKVQEYNE 174
>UniRef50_Q7R0S4 Cluster: GLP_186_71509_70955; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_186_71509_70955 - Giardia lamblia
ATCC 50803
Length = 184
Score = 132 bits (319), Expect = 7e-30
Identities = 65/182 (35%), Positives = 106/182 (58%), Gaps = 1/182 (0%)
Frame = +3
Query: 114 VRKLKFHEGKLLKKVDFISWKLDNNISEVKVMKKFCIQKREDYTKYNKLSRDIRELANKI 293
+R LK+HE KLLKK WK +I + M K+ + R + Y + R IR + +
Sbjct: 1 MRALKYHEEKLLKKTSLYDWKDSYSIIDSATMNKYGVYDRRELITYRQTMRKIRHMVELL 60
Query: 294 KDLDPNNEFRTESSAQLLEKLYQIGLIPT-RWDLALATNVSASSFCRRRLPVLMVRNKMS 470
L +N R E + +L LY +G++ + L + +++S+ RRLP +M++ KM
Sbjct: 61 TQLPQDNNVRIELTRRLSRILYDMGVVDNAQASLDDISKLNSSALLLRRLPCIMMKLKMV 120
Query: 471 ETIKEATKFIEQGHVRVGPEVVKDPAFLVNRSLEDFVTWVDGSAIRKHVLEYNEMRDDFD 650
+ I++ +F++QGHVRVGP VV +PA V R EDFVTW + S+I++ +L Y + D ++
Sbjct: 121 QKIQDGVRFVKQGHVRVGPNVVVNPALHVTRGHEDFVTWTNNSSIKRKILRYADNIDHYE 180
Query: 651 ML 656
+L
Sbjct: 181 LL 182
>UniRef50_Q74NF7 Cluster: 30S ribosomal protein S4P; n=5;
Archaea|Rep: 30S ribosomal protein S4P - Nanoarchaeum
equitans
Length = 180
Score = 69.3 bits (162), Expect = 8e-11
Identities = 37/145 (25%), Positives = 75/145 (51%)
Frame = +3
Query: 171 WKLDNNISEVKVMKKFCIQKREDYTKYNKLSRDIRELANKIKDLDPNNEFRTESSAQLLE 350
W+ I E ++MK++ ++ + + ++R R A + + +E + L
Sbjct: 15 WQKQRLIIEKRLMKEYGLKNKRELWIAETIARKWRAYARYLNAKQAAGQDISEEKERFLT 74
Query: 351 KLYQIGLIPTRWDLALATNVSASSFCRRRLPVLMVRNKMSETIKEATKFIEQGHVRVGPE 530
KL ++G++ +L +++ RRL ++VR +++T+K+A +FI GH+ V E
Sbjct: 75 KLKKLGVLSENAELDDVLDLTVKDVLERRLQTMLVRKGLAKTMKQARQFIVHGHIMVNGE 134
Query: 531 VVKDPAFLVNRSLEDFVTWVDGSAI 605
VV P++LV + ED + +V S +
Sbjct: 135 VVDAPSYLVKKEEEDKIEFVPFSPL 159
>UniRef50_Q2NFZ4 Cluster: 30S ribosomal protein S4P; n=3;
Methanobacteriaceae|Rep: 30S ribosomal protein S4P -
Methanosphaera stadtmanae (strain DSM 3091)
Length = 182
Score = 62.1 bits (144), Expect = 1e-08
Identities = 41/162 (25%), Positives = 75/162 (46%), Gaps = 2/162 (1%)
Frame = +3
Query: 132 HEGKLLKKVDFIS--WKLDNNISEVKVMKKFCIQKREDYTKYNKLSRDIRELANKIKDLD 305
H K K+ D S W D E ++ K+ ++ +++ K + R A I +D
Sbjct: 3 HPKKPRKQYDTPSHPWNADRIKEENRLANKYGLKNKKEIWKAESRVKRYRRDARIILGMD 62
Query: 306 PNNEFRTESSAQLLEKLYQIGLIPTRWDLALATNVSASSFCRRRLPVLMVRNKMSETIKE 485
+ R + +LL+ L + G I L +++ RRRL L+ + +S T KE
Sbjct: 63 IDE--RADKEKELLDHLVRAGFISPNAKLEEVLDLNVEDILRRRLQSLVFKRGLSHTAKE 120
Query: 486 ATKFIEQGHVRVGPEVVKDPAFLVNRSLEDFVTWVDGSAIRK 611
A F+ GH+ + + + P LV ++ E+ + + GS++ K
Sbjct: 121 ARLFVVHGHITLNGKKINAPGHLVEKADEENIDFYPGSSVAK 162
>UniRef50_Q96YV8 Cluster: 30S ribosomal protein S4P; n=2;
Sulfolobaceae|Rep: 30S ribosomal protein S4P -
Sulfolobus tokodaii
Length = 177
Score = 59.3 bits (137), Expect = 8e-08
Identities = 36/149 (24%), Positives = 70/149 (46%), Gaps = 1/149 (0%)
Frame = +3
Query: 171 WKLDNNISEVKVMKKFCIQKREDYTKYNKLSRDIRELANKIKDLDPNNEFRTESSAQLLE 350
W N E ++ K+ ++ + + + R R A + L P R+ QL++
Sbjct: 18 WIRINLEKEQVLIGKYGLRNKRELWLAQTIIRKFRHQARSLLALPPAE--RSTREKQLIQ 75
Query: 351 KLYQIGLIPT-RWDLALATNVSASSFCRRRLPVLMVRNKMSETIKEATKFIEQGHVRVGP 527
KLY++G+I L ++ ++ RRL ++ + ++ TI +A + I GH+ +G
Sbjct: 76 KLYRMGIIEKDNATLDDILGLNEENYLERRLQTIVYKKGLARTIYQARQLIVHGHIAIGG 135
Query: 528 EVVKDPAFLVNRSLEDFVTWVDGSAIRKH 614
V P ++V R ED + + S ++H
Sbjct: 136 RRVTSPGYIVMRGEEDLIDFYPTSPFKQH 164
>UniRef50_Q0W1V5 Cluster: 30S ribosomal protein S4P; n=1; uncultured
methanogenic archaeon RC-I|Rep: 30S ribosomal protein
S4P - Uncultured methanogenic archaeon RC-I
Length = 205
Score = 54.4 bits (125), Expect = 2e-06
Identities = 35/155 (22%), Positives = 69/155 (44%), Gaps = 5/155 (3%)
Frame = +3
Query: 171 WKLDNNISEVKVMKKFCIQKREDYTKYNKLSRDIRELANKIKDLD-----PNNEFRTESS 335
W+ E ++KK+ ++ ++ K+ R R A + + P + +
Sbjct: 18 WQKARIDEETSLVKKYGLRNKKSVWKHASDLRKYRSNARALLGVMSAGNLPEDSHYIRDA 77
Query: 336 AQLLEKLYQIGLIPTRWDLALATNVSASSFCRRRLPVLMVRNKMSETIKEATKFIEQGHV 515
+++KL +G++ L + RRL ++ R + +IK+A +FI GH+
Sbjct: 78 QNIVKKLQTLGILKEDAKLEDVLALKVDDIMERRLQTIIYRKGFANSIKQARQFIVHGHI 137
Query: 516 RVGPEVVKDPAFLVNRSLEDFVTWVDGSAIRKHVL 620
+ + P +LV +S ED +++ GS I K L
Sbjct: 138 SLNGRKITVPGYLVLKSEEDMLSYYVGSPITKEKL 172
>UniRef50_O15612 Cluster: 40S ribosomal protein S9; n=2; Entamoeba
histolytica|Rep: 40S ribosomal protein S9 - Entamoeba
histolytica
Length = 185
Score = 53.6 bits (123), Expect = 4e-06
Identities = 37/166 (22%), Positives = 79/166 (47%), Gaps = 1/166 (0%)
Frame = +3
Query: 111 MVRKLKFHEGKLLKKVDFISWKLDNNISEVKVMKKFCIQKREDYTKYNKLSRDIRELANK 290
M R L+ H + K + ++ + +E+K++ +F ++ +++ + + + +R +A
Sbjct: 1 MGRCLRNHS--ITYKTPKVPYERERFDAELKLVGQFGLKNKKEIQRVHYMLGHMRTIAKV 58
Query: 291 IKDLDPNNEFRTESSAQLLEKLYQIGLIPTRWD-LALATNVSASSFCRRRLPVLMVRNKM 467
+ D + R A LL +L+ +G++P + L + + RRL L+ R
Sbjct: 59 MLMKDAKDPKRLLEGAALLRRLHNLGILPRDQNKLEFVLALKEENLLERRLQTLVYRKGF 118
Query: 468 SETIKEATKFIEQGHVRVGPEVVKDPAFLVNRSLEDFVTWVDGSAI 605
+++I A I ++VG +VV P+FLV E + D + +
Sbjct: 119 AKSIHHARVLIRGKMIKVGKQVVDVPSFLVRVESEPLIQLADNTPL 164
>UniRef50_P46781 Cluster: 40S ribosomal protein S9; n=181;
Eukaryota|Rep: 40S ribosomal protein S9 - Homo sapiens
(Human)
Length = 194
Score = 49.2 bits (112), Expect = 9e-05
Identities = 30/122 (24%), Positives = 60/122 (49%), Gaps = 1/122 (0%)
Frame = +3
Query: 195 EVKVMKKFCIQKREDYTKYNKLSRDIRELANKIKDLDPNNEFRTESSAQLLEKLYQIGLI 374
E+K++ ++ ++ + + + IR+ A ++ LD + R LL +L +IG++
Sbjct: 28 ELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVL 87
Query: 375 PT-RWDLALATNVSASSFCRRRLPVLMVRNKMSETIKEATKFIEQGHVRVGPEVVKDPAF 551
+ L + F RRL + + ++++I A I Q H+RV +VV P+F
Sbjct: 88 DEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSF 147
Query: 552 LV 557
+V
Sbjct: 148 IV 149
>UniRef50_Q8ZTV1 Cluster: 30S ribosomal protein S4P; n=5;
Thermoproteaceae|Rep: 30S ribosomal protein S4P -
Pyrobaculum aerophilum
Length = 159
Score = 49.2 bits (112), Expect = 9e-05
Identities = 38/143 (26%), Positives = 66/143 (46%), Gaps = 3/143 (2%)
Frame = +3
Query: 171 WKLDNNISEVKVMKKFCIQKREDYTKYNKLSRDIRELANKIKDLDPNNEFRTESSAQLLE 350
W + E+++M ++ ++ +++ + I A + L E R E
Sbjct: 20 WNKQLLLEELQLMGEYGLRNKKELWLARARLKWITRRARSL--LSMTAEERAPLEMPFKE 77
Query: 351 KLYQIGLIP---TRWDLALATNVSASSFCRRRLPVLMVRNKMSETIKEATKFIEQGHVRV 521
KLY++G I + D L+ +V A RRL ++ R ++++I A + I GHV V
Sbjct: 78 KLYKMGFIEDPNVQLDRILSLDVRA--ILERRLQTIVYRMGLAKSIHHARQLIVHGHVAV 135
Query: 522 GPEVVKDPAFLVNRSLEDFVTWV 590
V P FLV R LED ++ +
Sbjct: 136 AGRRVTSPGFLVPRELEDKISLI 158
>UniRef50_P54020 Cluster: 30S ribosomal protein S4P; n=12;
Archaea|Rep: 30S ribosomal protein S4P - Methanococcus
jannaschii
Length = 187
Score = 48.8 bits (111), Expect = 1e-04
Identities = 33/147 (22%), Positives = 69/147 (46%), Gaps = 4/147 (2%)
Frame = +3
Query: 171 WKLDNNISEVKVMKKFCIQKREDYTKYNKLSRDIRELANKIKDLDPNNEFRTESSAQLLE 350
W + E ++ +K+ ++++ + K + R R A ++ + E + + QL
Sbjct: 19 WIKERIEREKELCRKYGLRRKREVWKAETILRKYRRQARRL--ISDRTEQGAKEAVQLFN 76
Query: 351 KLYQIGLI----PTRWDLALATNVSASSFCRRRLPVLMVRNKMSETIKEATKFIEQGHVR 518
L + G++ PT D+ +++ RRL L+ R ++ T ++A + I GH+
Sbjct: 77 VLKKYGILKIENPTLDDVL---SLTVEDILERRLQTLVFRKGLARTPRQARQLIVHGHIA 133
Query: 519 VGPEVVKDPAFLVNRSLEDFVTWVDGS 599
V VV P+++V ED +++ S
Sbjct: 134 VNGRVVTAPSYMVTVEEEDKISYAKNS 160
>UniRef50_A6UW05 Cluster: Ribosomal protein S4; n=1; Methanococcus
aeolicus Nankai-3|Rep: Ribosomal protein S4 -
Methanococcus aeolicus Nankai-3
Length = 177
Score = 48.4 bits (110), Expect = 2e-04
Identities = 36/138 (26%), Positives = 66/138 (47%), Gaps = 3/138 (2%)
Frame = +3
Query: 195 EVKVMKKFCIQKREDYTKYNKLSRDIRELANK-IKDLDPNNEFRTESSAQLLEKLYQIGL 371
E ++ K+ + +++ K R R A K I D E + + QL L + G+
Sbjct: 26 ERELSNKYGLSNKKEIWKMETRLRTFRRQARKLISDTSAQGE---KEAVQLFGILNRYGI 82
Query: 372 IPTRWDLAL--ATNVSASSFCRRRLPVLMVRNKMSETIKEATKFIEQGHVRVGPEVVKDP 545
+ + D L +++ S RRL L+ R ++ T K+A +FI GH+ V + + P
Sbjct: 83 L-LKEDATLDDVLSLNLESILERRLQTLVFRKGLANTPKQARQFIVHGHIAVNGKKINAP 141
Query: 546 AFLVNRSLEDFVTWVDGS 599
++LV ED ++++ S
Sbjct: 142 SYLVPLVEEDAISYMPNS 159
>UniRef50_Q97B95 Cluster: 30S ribosomal protein S4P; n=5;
Archaea|Rep: 30S ribosomal protein S4P - Thermoplasma
volcanium
Length = 200
Score = 47.2 bits (107), Expect = 4e-04
Identities = 28/146 (19%), Positives = 68/146 (46%), Gaps = 1/146 (0%)
Frame = +3
Query: 171 WKLDNNISEVKVMKKFCIQKREDYTKYNKLSRDIRELANKIKD-LDPNNEFRTESSAQLL 347
W+ D E K++ K+ ++ + + + + IR A ++ L ++ + +++
Sbjct: 18 WEKDRIDEENKILVKYGLKNKREIWRSEAMLSSIRSQARYLRARLRASDANAQKQLERMI 77
Query: 348 EKLYQIGLIPTRWDLALATNVSASSFCRRRLPVLMVRNKMSETIKEATKFIEQGHVRVGP 527
++L + ++ + L +++ + RRL ++ + ++ + K+A + I GH+ V
Sbjct: 78 KRLSRYKILSDKATLDDVLSLTVENILDRRLQTIVFKKNLALSEKQARQLITHGHITVNG 137
Query: 528 EVVKDPAFLVNRSLEDFVTWVDGSAI 605
V P LV ED + + + S I
Sbjct: 138 RRVTVPGMLVEAQYEDTIAYYENSPI 163
>UniRef50_A0RY02 Cluster: 30S ribosomal protein S4P; n=3;
Thermoprotei|Rep: 30S ribosomal protein S4P -
Cenarchaeum symbiosum
Length = 205
Score = 47.2 bits (107), Expect = 4e-04
Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 1/142 (0%)
Frame = +3
Query: 180 DNNISEVKVMKKFCIQ-KREDYTKYNKLSRDIRELANKIKDLDPNNEFRTESSAQLLEKL 356
D + E++ + F ++ KRE + + +LSR +R A + L E R LL L
Sbjct: 21 DLKMEELRTLGTFGLRTKRELWKAHTELSR-VRNQARSLLAL--GQEVRERKEPVLLRSL 77
Query: 357 YQIGLIPTRWDLALATNVSASSFCRRRLPVLMVRNKMSETIKEATKFIEQGHVRVGPEVV 536
+IGL+ L N+ + RRL ++++ T +A + + GH+ + VV
Sbjct: 78 ARIGLVGKDASLDDVLNLQVNDLLGRRLQTIVMKKLGFSTPYQARQAVVHGHITISDRVV 137
Query: 537 KDPAFLVNRSLEDFVTWVDGSA 602
P++ V E + GSA
Sbjct: 138 TIPSYTVYVEEEGDIKLTGGSA 159
>UniRef50_Q9HQJ6 Cluster: 30S ribosomal protein S4P; n=3;
Halobacteriaceae|Rep: 30S ribosomal protein S4P -
Halobacterium salinarium (Halobacterium halobium)
Length = 170
Score = 45.6 bits (103), Expect = 0.001
Identities = 29/135 (21%), Positives = 65/135 (48%)
Frame = +3
Query: 195 EVKVMKKFCIQKREDYTKYNKLSRDIRELANKIKDLDPNNEFRTESSAQLLEKLYQIGLI 374
E ++ ++ ++ +E+ + RD R A ++ + T S + + +L +IG++
Sbjct: 26 ESDLLSRYGLKNKEELWRAQSELRDYRREARRLL-----GQTGTVSGEEFVARLQRIGIL 80
Query: 375 PTRWDLALATNVSASSFCRRRLPVLMVRNKMSETIKEATKFIEQGHVRVGPEVVKDPAFL 554
L ++ + RRL ++ R ++ T+ +A +F+ GHV V V +P++
Sbjct: 81 SEEERLDDVLSLEVTDVLERRLQTVVYREGLANTMGQARQFVSHGHVTVDGSRVTEPSYT 140
Query: 555 VNRSLEDFVTWVDGS 599
V S E+ + + + S
Sbjct: 141 VPVSEENTLAFDETS 155
>UniRef50_Q8PV18 Cluster: 30S ribosomal protein S4P; n=8;
Euryarchaeota|Rep: 30S ribosomal protein S4P -
Methanosarcina mazei (Methanosarcina frisia)
Length = 219
Score = 45.2 bits (102), Expect = 0.001
Identities = 31/153 (20%), Positives = 72/153 (47%), Gaps = 8/153 (5%)
Frame = +3
Query: 171 WKLDNNISEVKVMKKFCIQKREDYTKYNKLSRDIRELANKI--------KDLDPNNEFRT 326
W+ +EV+++K + ++ +++ K + R R A K+ ++ + + T
Sbjct: 18 WQEARMAAEVQLVKAYGLRNKKEVWKAASMLRMYRSEARKLLAQVASGGQEGELEGHYAT 77
Query: 327 ESSAQLLEKLYQIGLIPTRWDLALATNVSASSFCRRRLPVLMVRNKMSETIKEATKFIEQ 506
+S ++L KL + G+I ++ ++ + RRL ++R ++ T+ +A +FI
Sbjct: 78 QSE-EILSKLIRYGIIKADANVDDILSLKTENILERRLQTQVLRLGLARTVIQARQFITH 136
Query: 507 GHVRVGPEVVKDPAFLVNRSLEDFVTWVDGSAI 605
GH+ + P LV++ E + + S +
Sbjct: 137 GHIAINGRKATIPGMLVSKEDEMHIGYYGSSPL 169
>UniRef50_A2F6M0 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 884
Score = 44.8 bits (101), Expect = 0.002
Identities = 27/74 (36%), Positives = 41/74 (55%)
Frame = +3
Query: 108 KMVRKLKFHEGKLLKKVDFISWKLDNNISEVKVMKKFCIQKREDYTKYNKLSRDIRELAN 287
KM++KLK +L ++ + + KL N E + KK + +E K NKLS ++EL N
Sbjct: 775 KMIKKLKIAVEQLSEENNDLQTKLSNLEEENNLNKK---EIKESNDKNNKLSTKLQELTN 831
Query: 288 KIKDLDPNNEFRTE 329
KI D NN+ +E
Sbjct: 832 KINDFSKNNQILSE 845
>UniRef50_A7IAH7 Cluster: Ribosomal protein S4; n=1; Candidatus
Methanoregula boonei 6A8|Rep: Ribosomal protein S4 -
Methanoregula boonei (strain 6A8)
Length = 185
Score = 44.8 bits (101), Expect = 0.002
Identities = 28/118 (23%), Positives = 55/118 (46%)
Frame = +3
Query: 246 KYNKLSRDIRELANKIKDLDPNNEFRTESSAQLLEKLYQIGLIPTRWDLALATNVSASSF 425
KY K +R++ L + + F + S +L+ + + GL+ D+ + +
Sbjct: 50 KYRKAARELLALMSSATN---QTVFEAKKS-ELISHMQRAGLLGPDADIDNVLALKVPAQ 105
Query: 426 CRRRLPVLMVRNKMSETIKEATKFIEQGHVRVGPEVVKDPAFLVNRSLEDFVTWVDGS 599
RRL L+ R ++ + K+A + + GH+ +G V P +LV R E +++ S
Sbjct: 106 LERRLQTLVYRKGLARSPKQARQLVTHGHIAIGGRRVTVPGYLVTRGEETTISYAGKS 163
>UniRef50_A0SNY6 Cluster: Ribosomal protein small subunit S9; n=1;
uncultured euryarchaeote ARMAN-2|Rep: Ribosomal protein
small subunit S9 - uncultured euryarchaeote ARMAN-2
Length = 187
Score = 44.8 bits (101), Expect = 0.002
Identities = 22/111 (19%), Positives = 58/111 (52%)
Frame = +3
Query: 255 KLSRDIRELANKIKDLDPNNEFRTESSAQLLEKLYQIGLIPTRWDLALATNVSASSFCRR 434
K+ +I L ++ L + ++S +++ ++ + G++ L +++ ++F R
Sbjct: 43 KVQSEISRLRGNVRVLLSGSSSH-DTSDKIIARMVKFGILENGATLEKVLDITPNAFLER 101
Query: 435 RLPVLMVRNKMSETIKEATKFIEQGHVRVGPEVVKDPAFLVNRSLEDFVTW 587
RL ++ + ++ TIK+A + I G + V + V P ++V + +D +++
Sbjct: 102 RLQTVVFKKGLARTIKQARQLITHGFIAVNMKRVSIPGYMVTTAEDDKISY 152
>UniRef50_Q3LWD1 Cluster: Ribosomal protein S9; n=1; Bigelowiella
natans|Rep: Ribosomal protein S9 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 180
Score = 44.0 bits (99), Expect = 0.003
Identities = 30/133 (22%), Positives = 63/133 (47%), Gaps = 1/133 (0%)
Frame = +3
Query: 192 SEVKVMKKFCIQKREDYTKYNKLSRDIRELANKIKDLDPNNEFRTESSAQLLEKLYQIGL 371
+E++++ F ++ + + + +R++A K+ E S +L Y+
Sbjct: 28 NEIRMINLFGLKNKRELWRTQFFLSKLRKVAEKLIYKKAKLEKIPSQSYGILWFCYKYNF 87
Query: 372 IPTR-WDLALATNVSASSFCRRRLPVLMVRNKMSETIKEATKFIEQGHVRVGPEVVKDPA 548
+ + L + S RRL ++ + K+S+TI EA I H++V ++V P+
Sbjct: 88 MNNMTFCLESIIKIDLRSILSRRLQTVVKQLKLSKTIHEARILIMHKHIQVKNQIVNKPS 147
Query: 549 FLVNRSLEDFVTW 587
FLV + E F+++
Sbjct: 148 FLVRKDNEIFISF 160
>UniRef50_A5K435 Cluster: Proteosome subunit alpha type 1, putative;
n=5; Plasmodium|Rep: Proteosome subunit alpha type 1,
putative - Plasmodium vivax
Length = 269
Score = 41.1 bits (92), Expect = 0.024
Identities = 23/85 (27%), Positives = 41/85 (48%)
Frame = +3
Query: 84 YILVLGVPKMVRKLKFHEGKLLKKVDFISWKLDNNISEVKVMKKFCIQKREDYTKYNKLS 263
+++V G+ K + KL FH+ KL K D+I + S+ KV+ K+ + + +
Sbjct: 43 FVVVCGLKKRISKLSFHQEKLFKIDDYIGVTMSGITSDAKVLTKYMRNECLSHKFLFDEN 102
Query: 264 RDIRELANKIKDLDPNNEFRTESSA 338
+I +L K+ D N R+ A
Sbjct: 103 MNIEKLVKKVADKYQQNTQRSSRRA 127
>UniRef50_Q5KLM6 Cluster: Nam9 protein, mitochondrial, putative;
n=2; Filobasidiella neoformans|Rep: Nam9 protein,
mitochondrial, putative - Cryptococcus neoformans
(Filobasidiella neoformans)
Length = 317
Score = 39.9 bits (89), Expect = 0.055
Identities = 15/43 (34%), Positives = 31/43 (72%)
Frame = +3
Query: 432 RRLPVLMVRNKMSETIKEATKFIEQGHVRVGPEVVKDPAFLVN 560
RRL VL+ R+ ++ + EA +++ QGHV++ +V+++P ++N
Sbjct: 142 RRLDVLIFRSCFAQNVWEARRYVVQGHVKLNGQVMRNPNIMLN 184
>UniRef50_Q2FT97 Cluster: 30S ribosomal protein S4P; n=2;
Methanomicrobiales|Rep: 30S ribosomal protein S4P -
Methanospirillum hungatei (strain JF-1 / DSM 864)
Length = 181
Score = 38.3 bits (85), Expect = 0.17
Identities = 27/121 (22%), Positives = 54/121 (44%), Gaps = 1/121 (0%)
Frame = +3
Query: 246 KYNKLSRDIRELANKIKDLDPNNEFRTESSA-QLLEKLYQIGLIPTRWDLALATNVSASS 422
KY K +R+I L + + + R E +L+ L + G++ D+ +
Sbjct: 50 KYRKAAREIIALQST-----GSEQARVERKKDELIGSLQRSGMLSENADIDDVLALKVEQ 104
Query: 423 FCRRRLPVLMVRNKMSETIKEATKFIEQGHVRVGPEVVKDPAFLVNRSLEDFVTWVDGSA 602
RRL + R + + K+A +FI GH+ +G V P + V+ ++ +++ S
Sbjct: 105 QLDRRLQTQVYRRGFARSPKQARQFITHGHIAIGGRRVTIPGYTVSAKEQEEISYAGSSP 164
Query: 603 I 605
+
Sbjct: 165 L 165
>UniRef50_Q2SR74 Cluster: Putative uncharacterized protein; n=2;
Mycoplasma|Rep: Putative uncharacterized protein -
Mycoplasma capricolum subsp. capricolum (strain
California kid / ATCC27343 / NCTC 10154)
Length = 572
Score = 36.3 bits (80), Expect = 0.67
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 10/98 (10%)
Frame = +3
Query: 108 KMVRKLKFHEGKLLKKVDFISWK-----LDNNISEVKVMKKFC-----IQKREDYTKYNK 257
K + LK E KLL + K LDN+ISE+K KK +K+ D ++N+
Sbjct: 201 KSLSDLKRSESKLLNTQTIKNIKDTINVLDNHISELKTRKKLLGVDANFEKKLD--EFNQ 258
Query: 258 LSRDIRELANKIKDLDPNNEFRTESSAQLLEKLYQIGL 371
+ I EL++KI +L+ ES +L + + + L
Sbjct: 259 IKFKINELSSKISNLELRQNLILESKKELENQKFNVNL 296
>UniRef50_Q2WCV5 Cluster: Putative insecticidal toxin complex
protein; n=1; Yersinia enterocolitica (type 0:9)|Rep:
Putative insecticidal toxin complex protein - Yersinia
enterocolitica (type 0:9)
Length = 719
Score = 36.3 bits (80), Expect = 0.67
Identities = 26/109 (23%), Positives = 49/109 (44%)
Frame = +3
Query: 159 DFISWKLDNNISEVKVMKKFCIQKREDYTKYNKLSRDIRELANKIKDLDPNNEFRTESSA 338
+F +W+ + + ++ F + D+T +KLS +I EL K+++ + N+EF
Sbjct: 548 EFKTWQQQVKVPISEALRYFSLFS--DHTDVDKLSSEINELEKKLEEENKNSEFIDTQYK 605
Query: 339 QLLEKLYQIGLIPTRWDLALATNVSASSFCRRRLPVLMVRNKMSETIKE 485
+L K+ + + + D A S + +LMV TI E
Sbjct: 606 ELSNKIKPLETLVKKLDREAAIIESNIKIKLSDIRILMVSKDAGITIDE 654
>UniRef50_A6UUX2 Cluster: SMC domain protein; n=1; Methanococcus
aeolicus Nankai-3|Rep: SMC domain protein -
Methanococcus aeolicus Nankai-3
Length = 994
Score = 36.3 bits (80), Expect = 0.67
Identities = 18/63 (28%), Positives = 35/63 (55%)
Frame = +3
Query: 177 LDNNISEVKVMKKFCIQKREDYTKYNKLSRDIRELANKIKDLDPNNEFRTESSAQLLEKL 356
L+ +++++ KK + +E+Y KY +LS+ +EL NK+ +L E + Q+
Sbjct: 370 LNKELTKIENSKKELNKNKENYLKYLELSKKSKELNNKLMELSGIKEKENDLKQQIKSTE 429
Query: 357 YQI 365
Y+I
Sbjct: 430 YKI 432
>UniRef50_Q5A195 Cluster: Putative uncharacterized protein NUM1;
n=1; Candida albicans|Rep: Putative uncharacterized
protein NUM1 - Candida albicans (Yeast)
Length = 1537
Score = 35.9 bits (79), Expect = 0.89
Identities = 36/141 (25%), Positives = 59/141 (41%), Gaps = 13/141 (9%)
Frame = +3
Query: 201 KVMKKFCIQKREDYTKYNKLSRDIRELANKIKD----LDPNNEFRTESSAQLLEKLYQIG 368
K K I E K S+ + +LA + K ++ + +S L + + G
Sbjct: 114 KENNKIIISPDEHKQLVTKASKTLSDLAKENKSVVVPIEEYQDLNAMASKSLQDHATEQG 173
Query: 369 LIPTRW----DLALATNVSASSFCRRRLPVLMVRNKMSETIKEATKFI-----EQGHVRV 521
+I DL A N +A+ + + VL+ +K+A+K + EQG V V
Sbjct: 174 VIVLSKNEHDDLTRAANKTAADHAKEKGMVLLKAEDHDSLVKQASKSLQDLCKEQGMVLV 233
Query: 522 GPEVVKDPAFLVNRSLEDFVT 584
PE K+ +R+L DF T
Sbjct: 234 SPEEHKELTTKASRTLHDFAT 254
>UniRef50_A5N224 Cluster: Putative uncharacterized protein; n=1;
Clostridium kluyveri DSM 555|Rep: Putative
uncharacterized protein - Clostridium kluyveri DSM 555
Length = 334
Score = 35.5 bits (78), Expect = 1.2
Identities = 17/77 (22%), Positives = 41/77 (53%)
Frame = -1
Query: 407 ISGQGKIPSCRYQSNLVKFFQKLST*LCPEFIIWIEVFYLVCELSDITRQFVILCVILTL 228
+SG G + + S+ +F K + P++++W ++ L+ IT+ F I + +
Sbjct: 62 VSGMGLTINYKKDSSYSEFIVKRFLKIVPQYVLWCILYVLI-----ITKNFNIYSDLSDM 116
Query: 227 LYTKLFHNLHFTNIVIQ 177
+Y +F++ +F ++I+
Sbjct: 117 VYGNVFYHFYFVPLIIE 133
>UniRef50_Q3ZX00 Cluster: DNA-directed RNA polymerase subunit beta';
n=3; Dehalococcoides|Rep: DNA-directed RNA polymerase
subunit beta' - Dehalococcoides sp. (strain CBDB1)
Length = 1295
Score = 35.5 bits (78), Expect = 1.2
Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 11/78 (14%)
Frame = +3
Query: 450 MVRNKMSETIKEATKFIEQGHVRVGP---EVVKDPAFLVNR-------SLEDFV-TWVDG 596
+VR+ ++ IK A + +E+ V EVVKD L+NR S++ F +DG
Sbjct: 441 LVRDGLAPNIKSARRLVERARPEVYDILEEVVKDRPVLLNRAPTLHRLSIQAFEPVLIDG 500
Query: 597 SAIRKHVLEYNEMRDDFD 650
SA+R H L + DFD
Sbjct: 501 SALRLHPLVCSAFNADFD 518
>UniRef50_Q8G5G4 Cluster: Hemolysin-like protein with S4 domain
found in bacteria and plants; n=4; Bifidobacterium|Rep:
Hemolysin-like protein with S4 domain found in bacteria
and plants - Bifidobacterium longum
Length = 280
Score = 35.1 bits (77), Expect = 1.6
Identities = 15/41 (36%), Positives = 27/41 (65%)
Frame = +3
Query: 435 RLPVLMVRNKMSETIKEATKFIEQGHVRVGPEVVKDPAFLV 557
RL +++V + + E+ +A + I+ GHVRV E + P+F+V
Sbjct: 37 RLDMMLVASGLVESRAKAQRLIKAGHVRVDGETITKPSFMV 77
>UniRef50_A7GMF9 Cluster: Putative uncharacterized protein
precursor; n=1; Bacillus cereus subsp. cytotoxis NVH
391-98|Rep: Putative uncharacterized protein precursor -
Bacillus cereus subsp. cytotoxis NVH 391-98
Length = 217
Score = 35.1 bits (77), Expect = 1.6
Identities = 22/96 (22%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Frame = +3
Query: 66 QKHYITYILVLG-VPKMVRKLKFHEGKLLKKVDFISWKLDNNISEVKVMKKFCIQKREDY 242
+K +TY V + ++L + + K+ + +D KLD+ +EVK K +
Sbjct: 35 EKEKVTYEEAKAKVEEKEKELSYTKSKIKEGIDAEQKKLDDKKAEVKETLALVDNKNQLA 94
Query: 243 TKYNKLSRDIRELANKIKDLDPNNEFRTESSAQLLE 350
++ +KL +D+ +++ +LD N + + +L E
Sbjct: 95 SEVDKLGKDVEAKKSEVTELDVNIQAKKSELQKLTE 130
>UniRef50_Q235N8 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 395
Score = 34.3 bits (75), Expect = 2.7
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Frame = +3
Query: 108 KMVRKLKFHEGKLLKKVDFIS--WKLDNNISEVKVMKKFCIQKREDYTKYNKLSRDIREL 281
K+ +KL+F L++ F+ ++ + NI E ++MKK I+K + + +++REL
Sbjct: 17 KLNQKLEFDRDDKLQQQQFLQSQYEKEKNIFEERLMKKEEIKKIDQVKFDEEKQQELREL 76
Query: 282 ANKIKDLDPNNEFRTESSAQLLEKLYQ 362
K+ +L N E EK YQ
Sbjct: 77 RQKLDEL--NTELTPLRPYHEKEKYYQ 101
>UniRef50_Q7V395 Cluster: tRNA modification GTPase trmE; n=5;
Prochlorococcus marinus|Rep: tRNA modification GTPase
trmE - Prochlorococcus marinus subsp. pastoris (strain
CCMP 1378 / MED4)
Length = 460
Score = 34.3 bits (75), Expect = 2.7
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Frame = +3
Query: 135 EGKLLKKVDFISWKLDNNISEVKVMKKFCIQKREDYTK--YNKLSRDIRELANKIKDLDP 308
+G++ KK+D I L +SE++ F ED+++ YN SR+I+ + KIK L
Sbjct: 161 KGEIKKKIDIIKNDLIEQLSEIEARVDF----EEDFSEFNYNDFSRNIKIIKEKIKILIE 216
Query: 309 NNE 317
N++
Sbjct: 217 NSK 219
>UniRef50_Q4SUE8 Cluster: Chromosome undetermined SCAF13964, whole
genome shotgun sequence; n=4; Euteleostomi|Rep:
Chromosome undetermined SCAF13964, whole genome shotgun
sequence - Tetraodon nigroviridis (Green puffer)
Length = 925
Score = 33.9 bits (74), Expect = 3.6
Identities = 43/187 (22%), Positives = 85/187 (45%), Gaps = 11/187 (5%)
Frame = +3
Query: 114 VRKLKFHEGKLLKKVDFISWKLDNNISEVKVMKKFCIQKREDY----TKYNKLSRDIREL 281
+R++ + ++++K+ + L N E +K+ + +E+ KYN +I+EL
Sbjct: 297 LRRVLQEKIEVVRKLAEVERSLSNTEDECTHLKEMSERGQEELRELANKYNAAVNEIKEL 356
Query: 282 ANKIKDLDPNNEFRTESSAQLLEKL-YQIGLIPTRWDLALATNVSA----SSFCRRRLPV 446
+KIK + E T+ A+ +L +I + + + AL + A + F RL
Sbjct: 357 TDKIKVAEGRQEELTQRGAKEKRELELRIEEMEEK-EQALQARIEALQADNDFTNERLAA 415
Query: 447 LMVR-NKMSETIKEATKFIEQGHV-RVGPEVVKDPAFLVNRSLEDFVTWVDGSAIRKHVL 620
L VR ++ E + ++ HV G + + F+ S++ V S+I K +
Sbjct: 416 LQVRLEQLQEKSTKENNSLDNCHVNNSGDDATRTQQFIECPSVKQLKESV-SSSIHK-LA 473
Query: 621 EYNEMRD 641
++EM D
Sbjct: 474 NFDEMLD 480
>UniRef50_A6WGS0 Cluster: Putative uncharacterized protein; n=1;
Kineococcus radiotolerans SRS30216|Rep: Putative
uncharacterized protein - Kineococcus radiotolerans
SRS30216
Length = 170
Score = 33.9 bits (74), Expect = 3.6
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Frame = +3
Query: 264 RDIRELANKIKDLDPNNEFRTESSAQLLEKLYQIGLIPTRWDLALATNVSASS--FCRRR 437
+D R+LA K +P E + L E +G I T + A+A + SS R
Sbjct: 83 QDARQLAGWRKGAEPRQEMARDRVTALAEV---VGAITTHYSAAVAASFLRSSQPALDDR 139
Query: 438 LPVLMVRNKMSETIKE 485
PV+M+R +ET+ E
Sbjct: 140 APVVMIRETTAETLPE 155
>UniRef50_A6LZM3 Cluster: Putative uncharacterized protein; n=1;
Clostridium beijerinckii NCIMB 8052|Rep: Putative
uncharacterized protein - Clostridium beijerinckii NCIMB
8052
Length = 410
Score = 33.9 bits (74), Expect = 3.6
Identities = 33/143 (23%), Positives = 70/143 (48%), Gaps = 5/143 (3%)
Frame = +3
Query: 210 KKFCIQKREDYTKYNKLSRDIRELANKIKDLDPNNEFRTESSAQLLEKLYQIGLIPTRWD 389
K F R +Y Y+++ ++I K +D D +NEF ++ +K Y+IG I + D
Sbjct: 123 KNFIPLYRINYGYYSEIEKNIYGSGLKKEDFDKDNEFTPVILGEIFKKNYKIGDIISNDD 182
Query: 390 LALATNVSASSFCRRRLPVLMVRNKMSETIKEATKFIEQGH-VRVGPEVVKDPAFLVNRS 566
++ F ++ + +L N E+TK E+G + + + + +++ S
Sbjct: 183 --KSSKFKVVGFLKKDILILDGMNP-----AESTKSSEKGFIIPLTKTFLNEENYMLPHS 235
Query: 567 LEDFV-TW---VDGSAIRKHVLE 623
+++ V T+ +D SA+ K +++
Sbjct: 236 MKNMVFTFNNNLDNSAVIKQIID 258
>UniRef50_P39596 Cluster: UPF0409 protein ywbM precursor; n=2;
Bacillus|Rep: UPF0409 protein ywbM precursor - Bacillus
subtilis
Length = 385
Score = 33.9 bits (74), Expect = 3.6
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +3
Query: 144 LLKKVDFISWKLDNNISEVKVMKKFCIQKREDYTKYNKLS-RDIRELANKIKDL 302
L+K ++ KLD SE +V+ + YT Y+KLS + IREL+ K+ L
Sbjct: 321 LVKDHSDLTEKLDTEFSEFEVLMAKYKTNDQSYTSYDKLSEKQIRELSTKLTTL 374
>UniRef50_UPI0000499A36 Cluster: DnaJ family protein; n=1; Entamoeba
histolytica HM-1:IMSS|Rep: DnaJ family protein -
Entamoeba histolytica HM-1:IMSS
Length = 407
Score = 33.5 bits (73), Expect = 4.8
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Frame = -1
Query: 254 VILCVILTLLYTKLFHNLHFTNIVIQLP*YKVYFL*QFPFMKFKFSDHFGNTEH--KDIG 81
++ C+ + LL KL N ++ + +P +YFL FP+ + S G T H IG
Sbjct: 157 IVFCLWIVLLIVKLELNTEWSFSAVNVPIDILYFL-SFPYYSKRLSKLLGGTGHIINWIG 215
Query: 80 YVVFLL 63
+++F +
Sbjct: 216 FILFFV 221
>UniRef50_Q8JFV0 Cluster: Tyrosine-protein kinase receptor; n=5;
Euteleostomi|Rep: Tyrosine-protein kinase receptor -
Danio rerio (Zebrafish) (Brachydanio rerio)
Length = 1161
Score = 33.5 bits (73), Expect = 4.8
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = -1
Query: 299 VFYLVCELSDITRQFVILCVILTLLYTKLFHNLHFTNIVIQLP*YKV 159
VF + +S + V+ C LTL+Y + ++LH I +Q P YK+
Sbjct: 484 VFIMAVIVSTVVTGVVLTCASLTLIYYRKKNHLHAVRIRLQSPEYKL 530
>UniRef50_Q892T4 Cluster: Putative uncharacterized protein; n=1;
Clostridium tetani|Rep: Putative uncharacterized protein
- Clostridium tetani
Length = 245
Score = 33.5 bits (73), Expect = 4.8
Identities = 19/58 (32%), Positives = 34/58 (58%)
Frame = +3
Query: 123 LKFHEGKLLKKVDFISWKLDNNISEVKVMKKFCIQKREDYTKYNKLSRDIRELANKIK 296
LK H K + K+ + K DN E+ +KK ++R++Y K NK + DI++ +K++
Sbjct: 26 LKKH--KDISKLKELKVKFDNGKKELTDLKKELEEERKEYLKTNKKAEDIKKNIDKME 81
>UniRef50_Q5NYV8 Cluster: Endonuclease; n=1; Azoarcus sp. EbN1|Rep:
Endonuclease - Azoarcus sp. (strain EbN1) (Aromatoleum
aromaticum (strain EbN1))
Length = 860
Score = 33.5 bits (73), Expect = 4.8
Identities = 18/72 (25%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Frame = +3
Query: 348 EKLYQIGLIPTRWDLALAT-NVSASSFCRRRLPVLMVRNKMSETIKEATKFIEQGHVRVG 524
++ + + L T D AT + S + +PV++V K S T+K +++++ V G
Sbjct: 161 QREFPVSLTNTLRDFNKATATTNTSQIGQYNVPVVLVIKKNSSTLKNLLEWLKEHSVHQG 220
Query: 525 PEVVKDPAFLVN 560
++V P L++
Sbjct: 221 TQMVSQPMLLID 232
>UniRef50_Q31HK1 Cluster: Diguanylate cyclase/phosphodiesterase
(GGDEF & EAL domains) precursor; n=1; Thiomicrospira
crunogena XCL-2|Rep: Diguanylate
cyclase/phosphodiesterase (GGDEF & EAL domains)
precursor - Thiomicrospira crunogena (strain XCL-2)
Length = 864
Score = 33.5 bits (73), Expect = 4.8
Identities = 24/75 (32%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Frame = +3
Query: 144 LLKKVDFISWKLDN---NISEVKVMKKFCIQKRE-DYTKYNKLSRDIRELANKIKDLDPN 311
L+K VD +LDN +I ++ +KKF + DY ++++L+R + +L +KIK + +
Sbjct: 194 LVKSVD----ELDNQIVSIQQIDDLKKFAHGRSVFDYEEFDQLNRSLNQLGDKIKHIAID 249
Query: 312 NEFRTESSAQLLEKL 356
+ + QLL+KL
Sbjct: 250 RDI-LDFEIQLLDKL 263
>UniRef50_A0EI16 Cluster: Chromosome undetermined scaffold_98, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_98,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 1649
Score = 33.5 bits (73), Expect = 4.8
Identities = 15/48 (31%), Positives = 29/48 (60%)
Frame = -1
Query: 317 FIIWIEVFYLVCELSDITRQFVILCVILTLLYTKLFHNLHFTNIVIQL 174
F+I+ V L + D+ Q +++ +ILTL KLFH+ + ++I + +
Sbjct: 227 FLIFKVVMVLCFTILDVQNQRLLIIIILTLFSIKLFHSFNKSSIYLNI 274
>UniRef50_Q9WYA2 Cluster: Pseudouridine synthase; n=3; Bacteria|Rep:
Pseudouridine synthase - Thermotoga maritima
Length = 239
Score = 33.1 bits (72), Expect = 6.3
Identities = 21/51 (41%), Positives = 25/51 (49%)
Frame = +3
Query: 474 TIKEATKFIEQGHVRVGPEVVKDPAFLVNRSLEDFVTWVDGSAIRKHVLEY 626
T KE K I+QG V V VV DP V LE+ +DG +R H Y
Sbjct: 14 TRKEVKKLIKQGRVTVNGRVVLDPGHPV---LENDAVALDGEVVRFHKKVY 61
>UniRef50_A3N3H1 Cluster: Putative uncharacterized protein; n=2;
Actinobacillus pleuropneumoniae|Rep: Putative
uncharacterized protein - Actinobacillus
pleuropneumoniae serotype 5b (strain L20)
Length = 236
Score = 33.1 bits (72), Expect = 6.3
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +3
Query: 198 VKVMKKFCIQKREDYTKYNKLSRDIRELANK 290
VK+ KK+C + R DY K+NK ++ + A K
Sbjct: 121 VKIEKKWCNELRADYQKFNKATKTAKSAAKK 151
>UniRef50_A7QB66 Cluster: Chromosome chr4 scaffold_73, whole genome
shotgun sequence; n=2; Vitis vinifera|Rep: Chromosome
chr4 scaffold_73, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 728
Score = 33.1 bits (72), Expect = 6.3
Identities = 19/39 (48%), Positives = 23/39 (58%)
Frame = -1
Query: 323 PEFIIWIEVFYLVCELSDITRQFVILCVILTLLYTKLFH 207
P+FII +V YL L QF + +L LLYTKLFH
Sbjct: 695 PKFIITSDVLYLTFSL-----QFFLCDYLLFLLYTKLFH 728
>UniRef50_Q54G05 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 1492
Score = 33.1 bits (72), Expect = 6.3
Identities = 24/77 (31%), Positives = 40/77 (51%)
Frame = +3
Query: 135 EGKLLKKVDFISWKLDNNISEVKVMKKFCIQKREDYTKYNKLSRDIRELANKIKDLDPNN 314
+ KL +K + I+ ++NN S ++ + E + + N+L + E NKI +L NN
Sbjct: 860 QSKLNEKQNEINLLIENNQSSSDELQS---KLNEKHQEINELQSKLNEKQNKINELVENN 916
Query: 315 EFRTESSAQLLEKLYQI 365
E SS +L KL Q+
Sbjct: 917 E---SSSDELQSKLIQL 930
>UniRef50_Q26216 Cluster: Rhoptry protein; n=69; Plasmodium
(Vinckeia)|Rep: Rhoptry protein - Plasmodium yoelii
Length = 2771
Score = 33.1 bits (72), Expect = 6.3
Identities = 23/98 (23%), Positives = 49/98 (50%), Gaps = 2/98 (2%)
Frame = +3
Query: 66 QKHYITYILVLGVPKMVRKLKFHEGKL-LKKVDFISWKLDNNISEVKVMKKFCIQKREDY 242
+KHY I + + + K + + K +K + ++ I+E+K+MK + K Y
Sbjct: 791 KKHYNDQINIDNIKEKEAKQNYDQFKEHMKTIPPNENEISKTINEIKIMKDEFLSKVNKY 850
Query: 243 TKYNKLSRD-IRELANKIKDLDPNNEFRTESSAQLLEK 353
++K+ ++ + NK +L N+ +TE S + ++K
Sbjct: 851 NDFDKVYKEKVESEHNKFTEL--TNKIKTEVSDEEIKK 886
>UniRef50_Q8SRZ3 Cluster: ACTIN-RELATED PROTEIN; n=1;
Encephalitozoon cuniculi|Rep: ACTIN-RELATED PROTEIN -
Encephalitozoon cuniculi
Length = 555
Score = 33.1 bits (72), Expect = 6.3
Identities = 20/57 (35%), Positives = 30/57 (52%)
Frame = +3
Query: 222 IQKREDYTKYNKLSRDIRELANKIKDLDPNNEFRTESSAQLLEKLYQIGLIPTRWDL 392
IQ ED K NK+ ++ L ++IK+LDP+ E + LL + IG + DL
Sbjct: 382 IQDAEDLDKENKILESLKGLVHEIKELDPHFEPYVADTTDLLNGHF-IGRMNANVDL 437
>UniRef50_Q1Q2D3 Cluster: Putative uncharacterized protein; n=1;
Candidatus Kuenenia stuttgartiensis|Rep: Putative
uncharacterized protein - Candidatus Kuenenia
stuttgartiensis
Length = 754
Score = 32.7 bits (71), Expect = 8.3
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = +3
Query: 462 KMSETIKEATKFIEQGHVRVGPEVVKDPAFLV-NRSLEDFVTWVDGSAIRKHVL 620
K ++ +KE T I + V +G + + A++V N +FV+ DGS IRKH L
Sbjct: 45 KGAKVVKENTFAIRKAAVCIGADEHLEIAYVVYNNGKTEFVSLRDGSIIRKHDL 98
>UniRef50_A6DF71 Cluster: Putative uncharacterized protein; n=1;
Lentisphaera araneosa HTCC2155|Rep: Putative
uncharacterized protein - Lentisphaera araneosa HTCC2155
Length = 182
Score = 32.7 bits (71), Expect = 8.3
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Frame = +3
Query: 183 NNISEVKVM---KKFCIQKREDYTKYNKLSRDIRELANKIKDLDPNNEFRTESSAQLLEK 353
N+++ VK+M ++ K+ K K+ ++I + K+KD++ E ESSA+L
Sbjct: 91 NSVTMVKLMPWNERLVAIKKSRNKKIQKMWKNITPITKKLKDMEFGTEEHQESSAKLNVT 150
Query: 354 LYQI 365
L QI
Sbjct: 151 LIQI 154
>UniRef50_A7Q0G6 Cluster: Chromosome chr7 scaffold_42, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr7 scaffold_42, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 784
Score = 32.7 bits (71), Expect = 8.3
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +3
Query: 480 KEATKFIEQGHVRVGPEVVKDPAFLVNRSLEDFVTWVDGS 599
KEAT F+ G V PE DP + N ++ED+V+++ S
Sbjct: 617 KEATVFV-MGAGHVDPEKATDPGLIYNMTVEDYVSFMCAS 655
>UniRef50_Q5ILJ7 Cluster: Ribosomal protein S4; n=1; Polysphondylium
pallidum|Rep: Ribosomal protein S4 - Polysphondylium
pallidum (Cellular slime mold)
Length = 268
Score = 32.7 bits (71), Expect = 8.3
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +3
Query: 420 SFCRRRLPVLMVRNKMSETIKEATKFIEQGHVRVGPEVVKDPAFLVN 560
S RRL ++VR+ + +T+ A FI+ H+ V ++K + VN
Sbjct: 141 SIIERRLDSILVRSSLFQTMYAARHFIQYNHICVNGRIIKKLNYHVN 187
>UniRef50_P92166 Cluster: Putative uncharacterized protein; n=2;
Caenorhabditis|Rep: Putative uncharacterized protein -
Caenorhabditis elegans
Length = 309
Score = 32.7 bits (71), Expect = 8.3
Identities = 17/58 (29%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Frame = -1
Query: 329 LCPE-FIIWIEVFYLVCELSDITRQFVILCVILTLLYTKLFHNLHFTNIVIQLP*YKV 159
LCP +++ I +F +V L + FV+LC++LT +++K FH + ++ + Y +
Sbjct: 5 LCPSNYLLSINIFSIVLTLPMVII-FVLLCILLT-IHSKTFHPFFTLSFILLISSYAI 60
>UniRef50_A2D8C6 Cluster: Dynein heavy chain family protein; n=2;
cellular organisms|Rep: Dynein heavy chain family protein
- Trichomonas vaginalis G3
Length = 3872
Score = 32.7 bits (71), Expect = 8.3
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Frame = +3
Query: 123 LKFHEGKLLKKVDFISWKLDNNISEVKVMKKFCIQKREDYTKYNKLSRDIRELANKIKDL 302
L+ HE ++ K +F++ + N+ + F R+ + + NK S+D+ N IKDL
Sbjct: 2482 LQIHE-EIQSKFEFVTQNIFNDFAST-----FVTMSRQSFDEINKRSKDLENAINFIKDL 2535
Query: 303 ---DPNNEFRTESSAQLLEKL 356
E R L+E+L
Sbjct: 2536 TTKSKETEHRLNEITPLIEQL 2556
>UniRef50_Q8TYA5 Cluster: Predicted RNA-binding protein containing
the S4 domain; n=1; Methanopyrus kandleri|Rep: Predicted
RNA-binding protein containing the S4 domain -
Methanopyrus kandleri
Length = 79
Score = 32.7 bits (71), Expect = 8.3
Identities = 20/59 (33%), Positives = 33/59 (55%)
Frame = +3
Query: 432 RRLPVLMVRNKMSETIKEATKFIEQGHVRVGPEVVKDPAFLVNRSLEDFVTWVDGSAIR 608
RRL + ++E+ +EA + +E G VRV ++V+ P +LV+ E VDG +R
Sbjct: 5 RRLDAFLRDVGLAESRREAKRLVESGRVRVNGKLVRKPWWLVSPGDE---IEVDGVTVR 60
>UniRef50_Q18J31 Cluster: Probable DNA repair and recombination
protein radA; n=1; Haloquadratum walsbyi DSM 16790|Rep:
Probable DNA repair and recombination protein radA -
Haloquadratum walsbyi (strain DSM 16790)
Length = 520
Score = 32.7 bits (71), Expect = 8.3
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +3
Query: 567 LEDFVTWVDGSAIRKHVLEYNEMRDDFDML 656
LE F+TW+ GSA R+ V+ +N DFD++
Sbjct: 349 LEAFMTWLTGSARRRPVVAWNGYGFDFDVI 378
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 642,273,753
Number of Sequences: 1657284
Number of extensions: 12534522
Number of successful extensions: 37716
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 35976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37675
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 51652897375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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