Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc2h23
(671 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1470 - 33818394-33818625,33819636-33819743,33819895-33820028 147 8e-36
03_01_0382 + 2961665-2961672,2962504-2962557,2962935-2963004,296... 58 8e-09
11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192 56 2e-08
11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511 56 2e-08
09_03_0089 + 12265916-12267232 29 2.6
05_01_0167 - 1153778-1153927,1154006-1154797,1155602-1156408,115... 29 4.5
09_04_0233 - 15890085-15890234,15890345-15890551,15891112-158913... 28 7.8
01_05_0712 - 24531654-24531874,24532438-24532538,24532621-245327... 28 7.8
>04_04_1470 - 33818394-33818625,33819636-33819743,33819895-33820028
Length = 157
Score = 147 bits (356), Expect = 8e-36
Identities = 77/181 (42%), Positives = 111/181 (61%)
Frame = +3
Query: 114 VRKLKFHEGKLLKKVDFISWKLDNNISEVKVMKKFCIQKREDYTKYNKLSRDIRELANKI 293
+RKL+FHE KLLKK +F+ +K + + V +++ + +R+DY KYN + +++L N I
Sbjct: 1 MRKLRFHEQKLLKKTNFLDFKREKGHRDAIVTQRYLLVERDDYKKYNGICLMVQKLVNII 60
Query: 294 KDLDPNNEFRTESSAQLLEKLYQIGLIPTRWDLALATNVSASSFCRRRLPVLMVRNKMSE 473
K +DP + +R E + LL+KL RRL +MV+ K +E
Sbjct: 61 KQMDPRDPYRAEMTDMLLDKL-------------------------RRLATVMVKLKFAE 95
Query: 474 TIKEATKFIEQGHVRVGPEVVKDPAFLVNRSLEDFVTWVDGSAIRKHVLEYNEMRDDFDM 653
+KEA +I+QGHVRVGPE V DPAFLV R++EDF+TWVD S I++ V EYN DDFD
Sbjct: 96 HLKEAVTYIQQGHVRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVQEYNGELDDFDA 155
Query: 654 L 656
+
Sbjct: 156 M 156
>03_01_0382 +
2961665-2961672,2962504-2962557,2962935-2963004,
2963141-2963386,2967246-2967491,2968837-2968888,
2969270-2969651,2970527-2970681,2971389-2971713,
2975803-2975871,2976189-2976346,2976444-2976551,
2976659-2977131
Length = 781
Score = 57.6 bits (133), Expect = 8e-09
Identities = 48/158 (30%), Positives = 78/158 (49%), Gaps = 4/158 (2%)
Frame = +3
Query: 120 KLKFHEGKLLKKVDFISWKLDNNISEVKVMKKFCIQ-KREDYTKYNKLSRDIRELANKIK 296
KL GK KK ++ + +E+K++ ++ ++ KRE + LSR IR A +
Sbjct: 221 KLNLAYGKTFKKPRR-PYEKERLDAELKLVGEYGLRCKRELWRVQYALSR-IRNNARHLL 278
Query: 297 DLDPNNEFRTESSAQLLEKLYQIGLIP---TRWDLALATNVSASSFCRRRLPVLMVRNKM 467
LD N R LL ++ + GL+ + D LA V +F RRL L+ + M
Sbjct: 279 TLDEKNPRRIFEGEALLRRMNRYGLLADGQNKLDYVLALTVE--NFLARRLQTLVFKAGM 336
Query: 468 SETIKEATKFIEQGHVRVGPEVVKDPAFLVNRSLEDFV 581
+++I A I Q H+RVG ++V P+F+V E +
Sbjct: 337 AKSIHHARVLIRQRHIRVGRQIVNIPSFMVRVESEKHI 374
>11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192
Length = 195
Score = 56.4 bits (130), Expect = 2e-08
Identities = 42/134 (31%), Positives = 69/134 (51%), Gaps = 4/134 (2%)
Frame = +3
Query: 192 SEVKVMKKFCIQ-KREDYTKYNKLSRDIRELANKIKDLDPNNEFRTESSAQLLEKLYQIG 368
+E+K++ ++ ++ KRE + LSR IR A + LD N R LL ++ + G
Sbjct: 28 AELKLVGEYGLRCKRELWRVQYALSR-IRNNARHLLTLDEKNPRRIFEGEALLRRMNRYG 86
Query: 369 LIP---TRWDLALATNVSASSFCRRRLPVLMVRNKMSETIKEATKFIEQGHVRVGPEVVK 539
L+ + D LA V +F RRL L+ + M+++I A I Q H+RVG ++V
Sbjct: 87 LLADGQNKLDYVLALTVE--NFLARRLQTLVFKAGMAKSIHHARVLIRQRHIRVGRQIVN 144
Query: 540 DPAFLVNRSLEDFV 581
P+F+V E +
Sbjct: 145 IPSFMVRVESEKHI 158
>11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511
Length = 218
Score = 56.4 bits (130), Expect = 2e-08
Identities = 42/134 (31%), Positives = 69/134 (51%), Gaps = 4/134 (2%)
Frame = +3
Query: 192 SEVKVMKKFCIQ-KREDYTKYNKLSRDIRELANKIKDLDPNNEFRTESSAQLLEKLYQIG 368
+E+K++ ++ ++ KRE + LSR IR A + LD N R LL ++ + G
Sbjct: 51 AELKLVGEYGLRCKRELWRVQYALSR-IRNNARHLLTLDEKNPRRIFEGEALLRRMNRYG 109
Query: 369 LIP---TRWDLALATNVSASSFCRRRLPVLMVRNKMSETIKEATKFIEQGHVRVGPEVVK 539
L+ + D LA V +F RRL L+ + M+++I A I Q H+RVG ++V
Sbjct: 110 LLADGQNKLDYVLALTVE--NFLARRLQTLVFKAGMAKSIHHARVLIRQRHIRVGRQIVN 167
Query: 540 DPAFLVNRSLEDFV 581
P+F+V E +
Sbjct: 168 IPSFMVRVESEKHI 181
>09_03_0089 + 12265916-12267232
Length = 438
Score = 29.5 bits (63), Expect = 2.6
Identities = 20/59 (33%), Positives = 28/59 (47%)
Frame = -2
Query: 595 PSTHVTKSSSDLLTRNAGSFTTSGPTLTCPCSINFVASLIVSDILFRTINTGSLRLQKE 419
P + T SSS+L NA + TTS T S+N A+ D F+ LR+Q +
Sbjct: 241 PLSTSTPSSSNLAAANANATTTSTAAATTATSVNPTAAAGAGD-TFQLTPAALLRMQHD 298
>05_01_0167 -
1153778-1153927,1154006-1154797,1155602-1156408,
1156514-1156618,1156985-1157059,1157160-1157233,
1157388-1157450,1157549-1157647,1157704-1157811,
1157908-1157973,1158073-1158150,1158257-1158304,
1158381-1158440,1158527-1158610,1158902-1158949,
1159049-1159096,1161462-1161579
Length = 940
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/62 (25%), Positives = 30/62 (48%)
Frame = +3
Query: 171 WKLDNNISEVKVMKKFCIQKREDYTKYNKLSRDIRELANKIKDLDPNNEFRTESSAQLLE 350
W+ ++ +E+ + K+ ++N LSR E+A+K +F E S ++ E
Sbjct: 714 WRKNHKSTEIIIGKEIIPVSESSVLRFNILSRKFAEIASKGAKTVEAYKFLMEESEKIDE 773
Query: 351 KL 356
KL
Sbjct: 774 KL 775
>09_04_0233 -
15890085-15890234,15890345-15890551,15891112-15891356,
15891618-15891831,15892890-15893036
Length = 320
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/27 (48%), Positives = 20/27 (74%)
Frame = +3
Query: 489 TKFIEQGHVRVGPEVVKDPAFLVNRSL 569
T+F+ +GH+ VGPE PA+LV ++L
Sbjct: 122 TRFLFEGHLTVGPE-PPPPAWLVAQNL 147
>01_05_0712 -
24531654-24531874,24532438-24532538,24532621-24532716,
24532951-24533048,24533827-24533883,24534764-24534895,
24535042-24535155,24535227-24535359,24535448-24535678,
24535761-24535843,24536009-24536137,24536504-24536599,
24536719-24536773,24537316-24537386,24537472-24537525,
24537691-24537768,24537985-24538117,24539381-24539496,
24539580-24539651,24540113-24540218,24540657-24540772,
24541170-24541319,24541410-24541492,24541591-24541669,
24542645-24542695
Length = 884
Score = 27.9 bits (59), Expect = 7.8
Identities = 20/91 (21%), Positives = 40/91 (43%)
Frame = +3
Query: 210 KKFCIQKREDYTKYNKLSRDIRELANKIKDLDPNNEFRTESSAQLLEKLYQIGLIPTRWD 389
K+ +K+ED T + S+ ++ + DLDP+ E + L E + L+
Sbjct: 611 KREAEEKQEDETTSSHTSKSGKKQNARPVDLDPHGEKLVQIENPLAEGTKYLKLLQNNSS 670
Query: 390 LALATNVSASSFCRRRLPVLMVRNKMSETIK 482
+L T+ + R+ +L+ + + IK
Sbjct: 671 DSLETHTLSFELNMRKQKILLAFQAVKQLIK 701
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,723,801
Number of Sequences: 37544
Number of extensions: 328686
Number of successful extensions: 810
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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