Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2h23
         (671 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            25   1.6  
EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calc...    24   3.8  
AY263175-1|AAP78790.1|  814|Anopheles gambiae TmcA-like protein ...    24   5.0  

>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 25.4 bits (53), Expect = 1.6
 Identities = 8/39 (20%), Positives = 23/39 (58%)
 Frame = +3

Query: 162  FISWKLDNNISEVKVMKKFCIQKREDYTKYNKLSRDIRE 278
            ++  +L+N +S++++++   +  R D   +  +  D+RE
Sbjct: 3240 YLQKRLENGLSDLELLQSQAVANRSDMDWFGCMLEDLRE 3278


>EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calcium
            channel alpha2-delta subunit 1 protein.
          Length = 1256

 Score = 24.2 bits (50), Expect = 3.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 480  KEATKFIEQGHVRVGPEVVKDPA 548
            + +T   ++ H + GP VV DPA
Sbjct: 1092 QRSTPTPQRSHTQAGPRVVPDPA 1114


>AY263175-1|AAP78790.1|  814|Anopheles gambiae TmcA-like protein
           protein.
          Length = 814

 Score = 23.8 bits (49), Expect = 5.0
 Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
 Frame = +3

Query: 114 VRKLKFHEGKLLKKV-DFISWKLDNNISEVKVMKKFCIQKREDYTKYNKLSRDIRELANK 290
           +++++ H G ++     F+ W    NI    ++  F +   E Y    K   DIR+  +K
Sbjct: 138 IKEIESHFGSVVASYFTFLRWLFSVNIVISVLLVVFIMVPEEIYVDPEKAKCDIRKTMSK 197

Query: 291 IKDLDPNNEFRT 326
            ++L     F T
Sbjct: 198 -QELALTRNFST 208


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 691,447
Number of Sequences: 2352
Number of extensions: 13515
Number of successful extensions: 46
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 67322955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)