Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc2h23
(671 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK223121-1|BAD96841.1| 184|Homo sapiens U3 snoRNP protein 3 hom... 248 1e-65
BC011745-1|AAH11745.1| 184|Homo sapiens IMP3, U3 small nucleola... 248 2e-65
BC006487-1|AAH06487.1| 184|Homo sapiens IMP3, U3 small nucleola... 248 2e-65
AY050497-1|AAL06639.1| 184|Homo sapiens BRMS2 protein. 248 2e-65
AK001830-1|BAA91929.1| 184|Homo sapiens protein ( Homo sapiens ... 248 2e-65
AB051628-1|BAB54955.1| 30|Homo sapiens mitochondrial ribosomal... 55 3e-07
BC096756-1|AAH96756.1| 194|Homo sapiens ribosomal protein S9 pr... 49 1e-05
BC071940-1|AAH71940.1| 194|Homo sapiens ribosomal protein S9 pr... 49 1e-05
BC068055-1|AAH68055.1| 194|Homo sapiens ribosomal protein S9 pr... 49 1e-05
BC007857-1|AAH07857.1| 194|Homo sapiens ribosomal protein S9 pr... 49 1e-05
BC007434-1|AAH07434.1| 194|Homo sapiens ribosomal protein S9 pr... 49 1e-05
BC007410-1|AAH07410.1| 194|Homo sapiens ribosomal protein S9 pr... 49 1e-05
BC000802-1|AAH00802.1| 194|Homo sapiens ribosomal protein S9 pr... 49 1e-05
AB061839-1|BAB79477.1| 194|Homo sapiens ribosomal protein S9 pr... 49 1e-05
U14971-1|AAA85659.1| 194|Homo sapiens ribosomal protein S9 prot... 48 2e-05
AL080243-1|CAB62915.1| 194|Homo sapiens protein ( Human DNA seq... 46 1e-04
BC141920-1|AAI41921.1| 113|Homo sapiens RPS9 protein protein. 40 0.011
BC010993-1|AAH10993.2| 337|Homo sapiens calcium binding protein... 32 1.6
AL138875-4|CAI10893.1| 337|Homo sapiens calcium binding protein... 32 1.6
AL136218-3|CAI10816.1| 337|Homo sapiens calcium binding protein... 32 1.6
AL136218-2|CAI10815.1| 132|Homo sapiens calcium binding protein... 32 1.6
BC106017-1|AAI06018.1| 867|Homo sapiens SETX protein protein. 31 2.8
BC078166-1|AAH78166.1| 917|Homo sapiens SETX protein protein. 31 2.8
BC032622-1|AAH32622.2| 1030|Homo sapiens SETX protein protein. 31 2.8
BC032600-1|AAH32600.1| 828|Homo sapiens SETX protein protein. 31 2.8
AY362728-1|AAR13367.1| 2677|Homo sapiens ataxia/oculomotor aprax... 31 2.8
AL353701-2|CAM14151.1| 2677|Homo sapiens senataxin protein. 31 2.8
AL159997-5|CAI40857.1| 948|Homo sapiens senataxin protein. 31 2.8
AL159997-2|CAI40854.1| 2677|Homo sapiens senataxin protein. 31 2.8
AK001456-1|BAA91701.1| 828|Homo sapiens protein ( Homo sapiens ... 31 2.8
AB014525-1|BAA31600.2| 2663|Homo sapiens KIAA0625 protein protein. 31 2.8
AK055413-1|BAB70919.1| 224|Homo sapiens protein ( Homo sapiens ... 31 5.0
>AK223121-1|BAD96841.1| 184|Homo sapiens U3 snoRNP protein 3
homolog protein.
Length = 184
Score = 248 bits (607), Expect = 1e-65
Identities = 109/182 (59%), Positives = 152/182 (83%), Gaps = 1/182 (0%)
Frame = +3
Query: 111 MVRKLKFHEGKLLKKVDFISWKL-DNNISEVKVMKKFCIQKREDYTKYNKLSRDIRELAN 287
MVRKLKFHE KLLK+VDF++W++ D+N+ E++V++++ +Q+REDYT+YN+LSR +RELA
Sbjct: 1 MVRKLKFHEQKLLKRVDFLNWEVTDHNLHELRVLRRYRLQRREDYTRYNQLSRAVRELAR 60
Query: 288 KIKDLDPNNEFRTESSAQLLEKLYQIGLIPTRWDLALATNVSASSFCRRRLPVLMVRNKM 467
+++DL ++FR +SA LL+KLY +GL+PTR L L V+ASSFCRRRLP ++++ +M
Sbjct: 61 RLRDLPERDQFRVRASAALLDKLYALGLVPTRGSLELCDFVTASSFCRRRLPTVLLKLRM 120
Query: 468 SETIKEATKFIEQGHVRVGPEVVKDPAFLVNRSLEDFVTWVDGSAIRKHVLEYNEMRDDF 647
++ ++ A F+EQGHVRVGP+VV DPAFLV RS+EDFVTWVD S I++HVLEYNE RDDF
Sbjct: 121 AQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEERDDF 180
Query: 648 DM 653
D+
Sbjct: 181 DL 182
>BC011745-1|AAH11745.1| 184|Homo sapiens IMP3, U3 small nucleolar
ribonucleoprotein, homolog (yeast) protein.
Length = 184
Score = 248 bits (606), Expect = 2e-65
Identities = 109/182 (59%), Positives = 152/182 (83%), Gaps = 1/182 (0%)
Frame = +3
Query: 111 MVRKLKFHEGKLLKKVDFISWKL-DNNISEVKVMKKFCIQKREDYTKYNKLSRDIRELAN 287
MVRKLKFHE KLLK+VDF++W++ D+N+ E++V++++ +Q+REDYT+YN+LSR +RELA
Sbjct: 1 MVRKLKFHEQKLLKQVDFLNWEVTDHNLHELRVLRRYRLQRREDYTRYNQLSRAVRELAR 60
Query: 288 KIKDLDPNNEFRTESSAQLLEKLYQIGLIPTRWDLALATNVSASSFCRRRLPVLMVRNKM 467
+++DL ++FR +SA LL+KLY +GL+PTR L L V+ASSFCRRRLP ++++ +M
Sbjct: 61 RLRDLPERDQFRVRASAALLDKLYALGLVPTRGSLELCDFVTASSFCRRRLPTVLLKLRM 120
Query: 468 SETIKEATKFIEQGHVRVGPEVVKDPAFLVNRSLEDFVTWVDGSAIRKHVLEYNEMRDDF 647
++ ++ A F+EQGHVRVGP+VV DPAFLV RS+EDFVTWVD S I++HVLEYNE RDDF
Sbjct: 121 AQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEERDDF 180
Query: 648 DM 653
D+
Sbjct: 181 DL 182
>BC006487-1|AAH06487.1| 184|Homo sapiens IMP3, U3 small nucleolar
ribonucleoprotein, homolog (yeast) protein.
Length = 184
Score = 248 bits (606), Expect = 2e-65
Identities = 109/182 (59%), Positives = 152/182 (83%), Gaps = 1/182 (0%)
Frame = +3
Query: 111 MVRKLKFHEGKLLKKVDFISWKL-DNNISEVKVMKKFCIQKREDYTKYNKLSRDIRELAN 287
MVRKLKFHE KLLK+VDF++W++ D+N+ E++V++++ +Q+REDYT+YN+LSR +RELA
Sbjct: 1 MVRKLKFHEQKLLKQVDFLNWEVTDHNLHELRVLRRYRLQRREDYTRYNQLSRAVRELAR 60
Query: 288 KIKDLDPNNEFRTESSAQLLEKLYQIGLIPTRWDLALATNVSASSFCRRRLPVLMVRNKM 467
+++DL ++FR +SA LL+KLY +GL+PTR L L V+ASSFCRRRLP ++++ +M
Sbjct: 61 RLRDLPERDQFRVRASAALLDKLYALGLVPTRGSLELCDFVTASSFCRRRLPTVLLKLRM 120
Query: 468 SETIKEATKFIEQGHVRVGPEVVKDPAFLVNRSLEDFVTWVDGSAIRKHVLEYNEMRDDF 647
++ ++ A F+EQGHVRVGP+VV DPAFLV RS+EDFVTWVD S I++HVLEYNE RDDF
Sbjct: 121 AQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEERDDF 180
Query: 648 DM 653
D+
Sbjct: 181 DL 182
>AY050497-1|AAL06639.1| 184|Homo sapiens BRMS2 protein.
Length = 184
Score = 248 bits (606), Expect = 2e-65
Identities = 109/182 (59%), Positives = 152/182 (83%), Gaps = 1/182 (0%)
Frame = +3
Query: 111 MVRKLKFHEGKLLKKVDFISWKL-DNNISEVKVMKKFCIQKREDYTKYNKLSRDIRELAN 287
MVRKLKFHE KLLK+VDF++W++ D+N+ E++V++++ +Q+REDYT+YN+LSR +RELA
Sbjct: 1 MVRKLKFHEQKLLKQVDFLNWEVTDHNLHELRVLRRYRLQRREDYTRYNQLSRAVRELAR 60
Query: 288 KIKDLDPNNEFRTESSAQLLEKLYQIGLIPTRWDLALATNVSASSFCRRRLPVLMVRNKM 467
+++DL ++FR +SA LL+KLY +GL+PTR L L V+ASSFCRRRLP ++++ +M
Sbjct: 61 RLRDLPERDQFRVRASAALLDKLYALGLVPTRGSLELCDFVTASSFCRRRLPTVLLKLRM 120
Query: 468 SETIKEATKFIEQGHVRVGPEVVKDPAFLVNRSLEDFVTWVDGSAIRKHVLEYNEMRDDF 647
++ ++ A F+EQGHVRVGP+VV DPAFLV RS+EDFVTWVD S I++HVLEYNE RDDF
Sbjct: 121 AQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEERDDF 180
Query: 648 DM 653
D+
Sbjct: 181 DL 182
>AK001830-1|BAA91929.1| 184|Homo sapiens protein ( Homo sapiens
cDNA FLJ10968 fis, clone PLACE1000863, moderately
similar to PUTATIVE MITOCHONDRIAL 40S RIBOSOMAL PROTEIN
YHR148W. ).
Length = 184
Score = 248 bits (606), Expect = 2e-65
Identities = 109/182 (59%), Positives = 152/182 (83%), Gaps = 1/182 (0%)
Frame = +3
Query: 111 MVRKLKFHEGKLLKKVDFISWKL-DNNISEVKVMKKFCIQKREDYTKYNKLSRDIRELAN 287
MVRKLKFHE KLLK+VDF++W++ D+N+ E++V++++ +Q+REDYT+YN+LSR +RELA
Sbjct: 1 MVRKLKFHEQKLLKQVDFLNWEVTDHNLHELRVLRRYRLQRREDYTRYNQLSRAVRELAR 60
Query: 288 KIKDLDPNNEFRTESSAQLLEKLYQIGLIPTRWDLALATNVSASSFCRRRLPVLMVRNKM 467
+++DL ++FR +SA LL+KLY +GL+PTR L L V+ASSFCRRRLP ++++ +M
Sbjct: 61 RLRDLPERDQFRVRASAALLDKLYALGLVPTRGSLELCDFVTASSFCRRRLPTVLLKLRM 120
Query: 468 SETIKEATKFIEQGHVRVGPEVVKDPAFLVNRSLEDFVTWVDGSAIRKHVLEYNEMRDDF 647
++ ++ A F+EQGHVRVGP+VV DPAFLV RS+EDFVTWVD S I++HVLEYNE RDDF
Sbjct: 121 AQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEERDDF 180
Query: 648 DM 653
D+
Sbjct: 181 DL 182
>AB051628-1|BAB54955.1| 30|Homo sapiens mitochondrial ribosomal
protein S4 protein.
Length = 30
Score = 54.8 bits (126), Expect = 3e-07
Identities = 22/28 (78%), Positives = 25/28 (89%)
Frame = +3
Query: 570 EDFVTWVDGSAIRKHVLEYNEMRDDFDM 653
EDFVTWVD S I++HVLEYNE RDDFD+
Sbjct: 1 EDFVTWVDSSKIKRHVLEYNEERDDFDL 28
>BC096756-1|AAH96756.1| 194|Homo sapiens ribosomal protein S9
protein.
Length = 194
Score = 49.2 bits (112), Expect = 1e-05
Identities = 30/122 (24%), Positives = 60/122 (49%), Gaps = 1/122 (0%)
Frame = +3
Query: 195 EVKVMKKFCIQKREDYTKYNKLSRDIRELANKIKDLDPNNEFRTESSAQLLEKLYQIGLI 374
E+K++ ++ ++ + + + IR+ A ++ LD + R LL +L +IG++
Sbjct: 28 ELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVL 87
Query: 375 PT-RWDLALATNVSASSFCRRRLPVLMVRNKMSETIKEATKFIEQGHVRVGPEVVKDPAF 551
+ L + F RRL + + ++++I A I Q H+RV +VV P+F
Sbjct: 88 DEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSF 147
Query: 552 LV 557
+V
Sbjct: 148 IV 149
>BC071940-1|AAH71940.1| 194|Homo sapiens ribosomal protein S9
protein.
Length = 194
Score = 49.2 bits (112), Expect = 1e-05
Identities = 30/122 (24%), Positives = 60/122 (49%), Gaps = 1/122 (0%)
Frame = +3
Query: 195 EVKVMKKFCIQKREDYTKYNKLSRDIRELANKIKDLDPNNEFRTESSAQLLEKLYQIGLI 374
E+K++ ++ ++ + + + IR+ A ++ LD + R LL +L +IG++
Sbjct: 28 ELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVL 87
Query: 375 PT-RWDLALATNVSASSFCRRRLPVLMVRNKMSETIKEATKFIEQGHVRVGPEVVKDPAF 551
+ L + F RRL + + ++++I A I Q H+RV +VV P+F
Sbjct: 88 DEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSF 147
Query: 552 LV 557
+V
Sbjct: 148 IV 149
>BC068055-1|AAH68055.1| 194|Homo sapiens ribosomal protein S9
protein.
Length = 194
Score = 49.2 bits (112), Expect = 1e-05
Identities = 30/122 (24%), Positives = 60/122 (49%), Gaps = 1/122 (0%)
Frame = +3
Query: 195 EVKVMKKFCIQKREDYTKYNKLSRDIRELANKIKDLDPNNEFRTESSAQLLEKLYQIGLI 374
E+K++ ++ ++ + + + IR+ A ++ LD + R LL +L +IG++
Sbjct: 28 ELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVL 87
Query: 375 PT-RWDLALATNVSASSFCRRRLPVLMVRNKMSETIKEATKFIEQGHVRVGPEVVKDPAF 551
+ L + F RRL + + ++++I A I Q H+RV +VV P+F
Sbjct: 88 DEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSF 147
Query: 552 LV 557
+V
Sbjct: 148 IV 149
>BC007857-1|AAH07857.1| 194|Homo sapiens ribosomal protein S9
protein.
Length = 194
Score = 49.2 bits (112), Expect = 1e-05
Identities = 30/122 (24%), Positives = 60/122 (49%), Gaps = 1/122 (0%)
Frame = +3
Query: 195 EVKVMKKFCIQKREDYTKYNKLSRDIRELANKIKDLDPNNEFRTESSAQLLEKLYQIGLI 374
E+K++ ++ ++ + + + IR+ A ++ LD + R LL +L +IG++
Sbjct: 28 ELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVL 87
Query: 375 PT-RWDLALATNVSASSFCRRRLPVLMVRNKMSETIKEATKFIEQGHVRVGPEVVKDPAF 551
+ L + F RRL + + ++++I A I Q H+RV +VV P+F
Sbjct: 88 DEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSF 147
Query: 552 LV 557
+V
Sbjct: 148 IV 149
>BC007434-1|AAH07434.1| 194|Homo sapiens ribosomal protein S9
protein.
Length = 194
Score = 49.2 bits (112), Expect = 1e-05
Identities = 30/122 (24%), Positives = 60/122 (49%), Gaps = 1/122 (0%)
Frame = +3
Query: 195 EVKVMKKFCIQKREDYTKYNKLSRDIRELANKIKDLDPNNEFRTESSAQLLEKLYQIGLI 374
E+K++ ++ ++ + + + IR+ A ++ LD + R LL +L +IG++
Sbjct: 28 ELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVL 87
Query: 375 PT-RWDLALATNVSASSFCRRRLPVLMVRNKMSETIKEATKFIEQGHVRVGPEVVKDPAF 551
+ L + F RRL + + ++++I A I Q H+RV +VV P+F
Sbjct: 88 DEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSF 147
Query: 552 LV 557
+V
Sbjct: 148 IV 149
>BC007410-1|AAH07410.1| 194|Homo sapiens ribosomal protein S9
protein.
Length = 194
Score = 49.2 bits (112), Expect = 1e-05
Identities = 30/122 (24%), Positives = 60/122 (49%), Gaps = 1/122 (0%)
Frame = +3
Query: 195 EVKVMKKFCIQKREDYTKYNKLSRDIRELANKIKDLDPNNEFRTESSAQLLEKLYQIGLI 374
E+K++ ++ ++ + + + IR+ A ++ LD + R LL +L +IG++
Sbjct: 28 ELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVL 87
Query: 375 PT-RWDLALATNVSASSFCRRRLPVLMVRNKMSETIKEATKFIEQGHVRVGPEVVKDPAF 551
+ L + F RRL + + ++++I A I Q H+RV +VV P+F
Sbjct: 88 DEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSF 147
Query: 552 LV 557
+V
Sbjct: 148 IV 149
>BC000802-1|AAH00802.1| 194|Homo sapiens ribosomal protein S9
protein.
Length = 194
Score = 49.2 bits (112), Expect = 1e-05
Identities = 30/122 (24%), Positives = 60/122 (49%), Gaps = 1/122 (0%)
Frame = +3
Query: 195 EVKVMKKFCIQKREDYTKYNKLSRDIRELANKIKDLDPNNEFRTESSAQLLEKLYQIGLI 374
E+K++ ++ ++ + + + IR+ A ++ LD + R LL +L +IG++
Sbjct: 28 ELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVL 87
Query: 375 PT-RWDLALATNVSASSFCRRRLPVLMVRNKMSETIKEATKFIEQGHVRVGPEVVKDPAF 551
+ L + F RRL + + ++++I A I Q H+RV +VV P+F
Sbjct: 88 DEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSF 147
Query: 552 LV 557
+V
Sbjct: 148 IV 149
>AB061839-1|BAB79477.1| 194|Homo sapiens ribosomal protein S9
protein.
Length = 194
Score = 49.2 bits (112), Expect = 1e-05
Identities = 30/122 (24%), Positives = 60/122 (49%), Gaps = 1/122 (0%)
Frame = +3
Query: 195 EVKVMKKFCIQKREDYTKYNKLSRDIRELANKIKDLDPNNEFRTESSAQLLEKLYQIGLI 374
E+K++ ++ ++ + + + IR+ A ++ LD + R LL +L +IG++
Sbjct: 28 ELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVL 87
Query: 375 PT-RWDLALATNVSASSFCRRRLPVLMVRNKMSETIKEATKFIEQGHVRVGPEVVKDPAF 551
+ L + F RRL + + ++++I A I Q H+RV +VV P+F
Sbjct: 88 DEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSF 147
Query: 552 LV 557
+V
Sbjct: 148 IV 149
>U14971-1|AAA85659.1| 194|Homo sapiens ribosomal protein S9
protein.
Length = 194
Score = 48.4 bits (110), Expect = 2e-05
Identities = 29/122 (23%), Positives = 60/122 (49%), Gaps = 1/122 (0%)
Frame = +3
Query: 195 EVKVMKKFCIQKREDYTKYNKLSRDIRELANKIKDLDPNNEFRTESSAQLLEKLYQIGLI 374
E+K++ ++ ++ + + + IR+ A ++ LD + R LL +L ++G++
Sbjct: 28 ELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRLGVL 87
Query: 375 PT-RWDLALATNVSASSFCRRRLPVLMVRNKMSETIKEATKFIEQGHVRVGPEVVKDPAF 551
+ L + F RRL + + ++++I A I Q H+RV +VV P+F
Sbjct: 88 DEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSF 147
Query: 552 LV 557
+V
Sbjct: 148 IV 149
>AL080243-1|CAB62915.1| 194|Homo sapiens protein ( Human DNA
sequence from clone RP11-12M9 on chromosome 22. ).
Length = 194
Score = 46.0 bits (104), Expect = 1e-04
Identities = 30/122 (24%), Positives = 59/122 (48%), Gaps = 1/122 (0%)
Frame = +3
Query: 195 EVKVMKKFCIQKREDYTKYNKLSRDIRELANKIKDLDPNNEFRTESSAQLLEKLYQIGLI 374
E+K+++++ ++ + + + IR+ A ++ LD + R LL +L IG++
Sbjct: 28 ELKLIEEYGLRNKREVWRVKFTLAKIRKAARELLTLDQKDPRRLFEGNALLWRLVCIGVL 87
Query: 375 PT-RWDLALATNVSASSFCRRRLPVLMVRNKMSETIKEATKFIEQGHVRVGPEVVKDPAF 551
+ L + F RRL + + ++++I A I Q H RV +VV P+F
Sbjct: 88 DEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHFRVRKQVVNIPSF 147
Query: 552 LV 557
+V
Sbjct: 148 IV 149
>BC141920-1|AAI41921.1| 113|Homo sapiens RPS9 protein protein.
Length = 113
Score = 39.5 bits (88), Expect = 0.011
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Frame = +3
Query: 303 DPNNEFRTESSAQLLEKLYQIGLIPT-RWDLALATNVSASSFCRRRLPVLMVRNKMSETI 479
DP F E +A LL +L +IG++ + L + F RRL + + ++++I
Sbjct: 6 DPRRLF--EGNA-LLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSI 62
Query: 480 KEATKFIEQGHVRVGPEVVKDPAFLV 557
A I Q H+RV +VV P+F+V
Sbjct: 63 HHARVLIRQRHIRVRKQVVNIPSFIV 88
>BC010993-1|AAH10993.2| 337|Homo sapiens calcium binding protein
39-like protein.
Length = 337
Score = 32.3 bits (70), Expect = 1.6
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Frame = +3
Query: 147 LKKVDFISWKLDNNISEVKVMK-KFCIQKREDYTKYNKLSRDIRELANKIKDL---DPNN 314
+KK+ S N VK++K I +++D K +K S ++ + +K++
Sbjct: 1 MKKMPLFSKSHKNPAEIVKILKDNLAILEKQD-KKTDKASEEVSKSLQAMKEILCGTNEK 59
Query: 315 EFRTESSAQLLEKLYQIGLIPT 380
E TE+ AQL ++LY GL+ T
Sbjct: 60 EPPTEAVAQLAQELYSSGLLVT 81
>AL138875-4|CAI10893.1| 337|Homo sapiens calcium binding protein
39-like protein.
Length = 337
Score = 32.3 bits (70), Expect = 1.6
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Frame = +3
Query: 147 LKKVDFISWKLDNNISEVKVMK-KFCIQKREDYTKYNKLSRDIRELANKIKDL---DPNN 314
+KK+ S N VK++K I +++D K +K S ++ + +K++
Sbjct: 1 MKKMPLFSKSHKNPAEIVKILKDNLAILEKQD-KKTDKASEEVSKSLQAMKEILCGTNEK 59
Query: 315 EFRTESSAQLLEKLYQIGLIPT 380
E TE+ AQL ++LY GL+ T
Sbjct: 60 EPPTEAVAQLAQELYSSGLLVT 81
>AL136218-3|CAI10816.1| 337|Homo sapiens calcium binding protein
39-like protein.
Length = 337
Score = 32.3 bits (70), Expect = 1.6
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Frame = +3
Query: 147 LKKVDFISWKLDNNISEVKVMK-KFCIQKREDYTKYNKLSRDIRELANKIKDL---DPNN 314
+KK+ S N VK++K I +++D K +K S ++ + +K++
Sbjct: 1 MKKMPLFSKSHKNPAEIVKILKDNLAILEKQD-KKTDKASEEVSKSLQAMKEILCGTNEK 59
Query: 315 EFRTESSAQLLEKLYQIGLIPT 380
E TE+ AQL ++LY GL+ T
Sbjct: 60 EPPTEAVAQLAQELYSSGLLVT 81
>AL136218-2|CAI10815.1| 132|Homo sapiens calcium binding protein
39-like protein.
Length = 132
Score = 32.3 bits (70), Expect = 1.6
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Frame = +3
Query: 147 LKKVDFISWKLDNNISEVKVMK-KFCIQKREDYTKYNKLSRDIRELANKIKDL---DPNN 314
+KK+ S N VK++K I +++D K +K S ++ + +K++
Sbjct: 1 MKKMPLFSKSHKNPAEIVKILKDNLAILEKQD-KKTDKASEEVSKSLQAMKEILCGTNEK 59
Query: 315 EFRTESSAQLLEKLYQIGLIPT 380
E TE+ AQL ++LY GL+ T
Sbjct: 60 EPPTEAVAQLAQELYSSGLLVT 81
>BC106017-1|AAI06018.1| 867|Homo sapiens SETX protein protein.
Length = 867
Score = 31.5 bits (68), Expect = 2.8
Identities = 19/67 (28%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Frame = +3
Query: 108 KMVRKLKFHEGKLLKKVDFISWKLDNNISEVKVMKKFC--IQKREDYTKYNKLSRDIREL 281
+M ++L H + K+ +F+ ++LD +S + + + IQ++E +K+S++ +EL
Sbjct: 258 RMKKELPSHVQAMHKRKEFLDYQLDE-LSRQRALCRGGREIQRQELDENISKVSKERQEL 316
Query: 282 ANKIKDL 302
A+KIK++
Sbjct: 317 ASKIKEV 323
>BC078166-1|AAH78166.1| 917|Homo sapiens SETX protein protein.
Length = 917
Score = 31.5 bits (68), Expect = 2.8
Identities = 19/67 (28%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Frame = +3
Query: 108 KMVRKLKFHEGKLLKKVDFISWKLDNNISEVKVMKKFC--IQKREDYTKYNKLSRDIREL 281
+M ++L H + K+ +F+ ++LD +S + + + IQ++E +K+S++ +EL
Sbjct: 308 RMKKELPSHVQAMHKRKEFLDYQLDE-LSRQRALCRGGREIQRQELDENISKVSKERQEL 366
Query: 282 ANKIKDL 302
A+KIK++
Sbjct: 367 ASKIKEV 373
>BC032622-1|AAH32622.2| 1030|Homo sapiens SETX protein protein.
Length = 1030
Score = 31.5 bits (68), Expect = 2.8
Identities = 19/67 (28%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Frame = +3
Query: 108 KMVRKLKFHEGKLLKKVDFISWKLDNNISEVKVMKKFC--IQKREDYTKYNKLSRDIREL 281
+M ++L H + K+ +F+ ++LD +S + + + IQ++E +K+S++ +EL
Sbjct: 421 RMKKELPSHVQAMHKRKEFLDYQLDE-LSRQRALCRGGREIQRQELDENISKVSKERQEL 479
Query: 282 ANKIKDL 302
A+KIK++
Sbjct: 480 ASKIKEV 486
>BC032600-1|AAH32600.1| 828|Homo sapiens SETX protein protein.
Length = 828
Score = 31.5 bits (68), Expect = 2.8
Identities = 19/67 (28%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Frame = +3
Query: 108 KMVRKLKFHEGKLLKKVDFISWKLDNNISEVKVMKKFC--IQKREDYTKYNKLSRDIREL 281
+M ++L H + K+ +F+ ++LD +S + + + IQ++E +K+S++ +EL
Sbjct: 219 RMKKELPSHVQAMHKRKEFLDYQLDE-LSRQRALCRGGREIQRQELDENISKVSKERQEL 277
Query: 282 ANKIKDL 302
A+KIK++
Sbjct: 278 ASKIKEV 284
>AY362728-1|AAR13367.1| 2677|Homo sapiens ataxia/oculomotor apraxia
protein 2 protein.
Length = 2677
Score = 31.5 bits (68), Expect = 2.8
Identities = 19/67 (28%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Frame = +3
Query: 108 KMVRKLKFHEGKLLKKVDFISWKLDNNISEVKVMKKFC--IQKREDYTKYNKLSRDIREL 281
+M ++L H + K+ +F+ ++LD +S + + + IQ++E +K+S++ +EL
Sbjct: 2068 RMKKELPSHVQAMHKRKEFLDYQLDE-LSRQRALCRGGREIQRQELDENISKVSKERQEL 2126
Query: 282 ANKIKDL 302
A+KIK++
Sbjct: 2127 ASKIKEV 2133
>AL353701-2|CAM14151.1| 2677|Homo sapiens senataxin protein.
Length = 2677
Score = 31.5 bits (68), Expect = 2.8
Identities = 19/67 (28%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Frame = +3
Query: 108 KMVRKLKFHEGKLLKKVDFISWKLDNNISEVKVMKKFC--IQKREDYTKYNKLSRDIREL 281
+M ++L H + K+ +F+ ++LD +S + + + IQ++E +K+S++ +EL
Sbjct: 2068 RMKKELPSHVQAMHKRKEFLDYQLDE-LSRQRALCRGGREIQRQELDENISKVSKERQEL 2126
Query: 282 ANKIKDL 302
A+KIK++
Sbjct: 2127 ASKIKEV 2133
>AL159997-5|CAI40857.1| 948|Homo sapiens senataxin protein.
Length = 948
Score = 31.5 bits (68), Expect = 2.8
Identities = 19/67 (28%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Frame = +3
Query: 108 KMVRKLKFHEGKLLKKVDFISWKLDNNISEVKVMKKFC--IQKREDYTKYNKLSRDIREL 281
+M ++L H + K+ +F+ ++LD +S + + + IQ++E +K+S++ +EL
Sbjct: 310 RMKKELPSHVQAMHKRKEFLDYQLDE-LSRQRALCRGGREIQRQELDENISKVSKERQEL 368
Query: 282 ANKIKDL 302
A+KIK++
Sbjct: 369 ASKIKEV 375
>AL159997-2|CAI40854.1| 2677|Homo sapiens senataxin protein.
Length = 2677
Score = 31.5 bits (68), Expect = 2.8
Identities = 19/67 (28%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Frame = +3
Query: 108 KMVRKLKFHEGKLLKKVDFISWKLDNNISEVKVMKKFC--IQKREDYTKYNKLSRDIREL 281
+M ++L H + K+ +F+ ++LD +S + + + IQ++E +K+S++ +EL
Sbjct: 2068 RMKKELPSHVQAMHKRKEFLDYQLDE-LSRQRALCRGGREIQRQELDENISKVSKERQEL 2126
Query: 282 ANKIKDL 302
A+KIK++
Sbjct: 2127 ASKIKEV 2133
>AK001456-1|BAA91701.1| 828|Homo sapiens protein ( Homo sapiens
cDNA FLJ10594 fis, clone NT2RP2004689. ).
Length = 828
Score = 31.5 bits (68), Expect = 2.8
Identities = 19/67 (28%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Frame = +3
Query: 108 KMVRKLKFHEGKLLKKVDFISWKLDNNISEVKVMKKFC--IQKREDYTKYNKLSRDIREL 281
+M ++L H + K+ +F+ ++LD +S + + + IQ++E +K+S++ +EL
Sbjct: 219 RMKKELPSHVQAMHKRKEFLDYQLDE-LSRQRALCRGGREIQRQELDENISKVSKERQEL 277
Query: 282 ANKIKDL 302
A+KIK++
Sbjct: 278 ASKIKEV 284
>AB014525-1|BAA31600.2| 2663|Homo sapiens KIAA0625 protein protein.
Length = 2663
Score = 31.5 bits (68), Expect = 2.8
Identities = 19/67 (28%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Frame = +3
Query: 108 KMVRKLKFHEGKLLKKVDFISWKLDNNISEVKVMKKFC--IQKREDYTKYNKLSRDIREL 281
+M ++L H + K+ +F+ ++LD +S + + + IQ++E +K+S++ +EL
Sbjct: 2054 RMKKELPSHVQAMHKRKEFLDYQLDE-LSRQRALCRGGREIQRQELDENISKVSKERQEL 2112
Query: 282 ANKIKDL 302
A+KIK++
Sbjct: 2113 ASKIKEV 2119
>AK055413-1|BAB70919.1| 224|Homo sapiens protein ( Homo sapiens
cDNA FLJ30851 fis, clone FEBRA2002908. ).
Length = 224
Score = 30.7 bits (66), Expect = 5.0
Identities = 35/135 (25%), Positives = 52/135 (38%), Gaps = 5/135 (3%)
Frame = +3
Query: 162 FISWKLDNNISEVKVMKKFCIQKREDYTKYNKLSRDIRELANKIKDLDPNNEFRTESSAQ 341
F K D N +V + K+ Y K N+ ++ KI + EF+ Q
Sbjct: 41 FYMSKKDPNFLKVTIPPFHDPLKKAQYDKDNEKRTLLQCETGKIYSI---KEFKEVEKVQ 97
Query: 342 LLEKLYQIG-----LIPTRWDLALATNVSASSFCRRRLPVLMVRNKMSETIKEATKFIEQ 506
L + QI + P W L L T S FCRRR RNK S ++ ++
Sbjct: 98 LHSRFPQISNSRHFITPNEW-LKLPTRYIESEFCRRR------RNKGSSFLEREPLCYQE 150
Query: 507 GHVRVGPEVVKDPAF 551
G+ E + + F
Sbjct: 151 GNNPSAKEAISEGYF 165
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,203,144
Number of Sequences: 237096
Number of extensions: 1898411
Number of successful extensions: 3860
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 3697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3855
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7647512560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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