Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc2h23
(671 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U97189-6|AAC48162.1| 183|Caenorhabditis elegans Hypothetical pr... 191 3e-49
Z69302-5|CAA93262.1| 189|Caenorhabditis elegans Hypothetical pr... 50 1e-06
Z81118-4|CAB03327.1| 309|Caenorhabditis elegans Hypothetical pr... 33 0.24
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. 32 0.32
AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated... 32 0.32
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 32 0.32
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 32 0.32
AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated... 32 0.32
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 32 0.32
AF068708-8|AAC17761.1| 327|Caenorhabditis elegans Hypothetical ... 31 0.75
Z68104-1|CAA92112.1| 866|Caenorhabditis elegans Hypothetical pr... 31 0.99
U64840-5|AAB04963.2| 346|Caenorhabditis elegans Hypothetical pr... 31 0.99
U53141-6|AAA96108.1| 346|Caenorhabditis elegans Hypothetical pr... 31 0.99
U00037-2|AAA50662.1| 212|Caenorhabditis elegans Hypothetical pr... 29 3.0
AF140272-1|AAD34863.1| 212|Caenorhabditis elegans NADH oxidored... 29 3.0
AC006607-7|AAL00855.1| 789|Caenorhabditis elegans Hypothetical ... 28 6.9
Z73423-7|CAL36497.1| 567|Caenorhabditis elegans Hypothetical pr... 27 9.2
Z73423-6|CAD44093.1| 575|Caenorhabditis elegans Hypothetical pr... 27 9.2
Z73423-5|CAA97777.3| 575|Caenorhabditis elegans Hypothetical pr... 27 9.2
Z50045-6|CAL36494.1| 567|Caenorhabditis elegans Hypothetical pr... 27 9.2
Z50045-5|CAD44129.1| 575|Caenorhabditis elegans Hypothetical pr... 27 9.2
Z50045-4|CAA90365.3| 575|Caenorhabditis elegans Hypothetical pr... 27 9.2
Z12017-2|CAA78048.1| 455|Caenorhabditis elegans Hypothetical pr... 27 9.2
X70834-1|CAA50182.1| 592|Caenorhabditis elegans Cytoplasmic int... 27 9.2
U49941-8|AAB53876.1| 2427|Caenorhabditis elegans Spectrin protei... 27 9.2
L10986-9|AAK93847.2| 808|Caenorhabditis elegans Spindle assembl... 27 9.2
AY204179-1|AAO39183.1| 486|Caenorhabditis elegans nuclear recep... 27 9.2
AJ539470-1|CAD62434.1| 808|Caenorhabditis elegans SAS-4 protein... 27 9.2
AF332209-1|AAK17980.1| 350|Caenorhabditis elegans nuclear recep... 27 9.2
AF078783-3|AAN63404.1| 504|Caenorhabditis elegans Nuclear hormo... 27 9.2
AF078783-2|AAK82901.1| 486|Caenorhabditis elegans Nuclear hormo... 27 9.2
>U97189-6|AAC48162.1| 183|Caenorhabditis elegans Hypothetical
protein C48B6.2 protein.
Length = 183
Score = 191 bits (466), Expect = 3e-49
Identities = 88/182 (48%), Positives = 125/182 (68%)
Frame = +3
Query: 111 MVRKLKFHEGKLLKKVDFISWKLDNNISEVKVMKKFCIQKREDYTKYNKLSRDIRELANK 290
MVRKLK HE KLLKK DF+SW++D + +++KF ++KRE Y YN L+ RE+A+
Sbjct: 1 MVRKLKTHEQKLLKKTDFMSWQVDQQGKQGDMLRKFYVKKREHYALYNTLAAKSREVADL 60
Query: 291 IKDLDPNNEFRTESSAQLLEKLYQIGLIPTRWDLALATNVSASSFCRRRLPVLMVRNKMS 470
IK+L ++ FR++ + +L K Y GL+PT L V+ +SF RRRLPV+M M
Sbjct: 61 IKNLSESDPFRSKCTEDMLTKFYAAGLVPTSDTLERIGKVTGASFARRRLPVVMRNIGMC 120
Query: 471 ETIKEATKFIEQGHVRVGPEVVKDPAFLVNRSLEDFVTWVDGSAIRKHVLEYNEMRDDFD 650
E++K A+ +EQGHVR+G ++V DPAF+V RS ED +TW S I+KHV++YN RDDFD
Sbjct: 121 ESVKTASDLVEQGHVRIGTKLVTDPAFMVTRSSEDMITWTKASKIKKHVMDYNNTRDDFD 180
Query: 651 ML 656
++
Sbjct: 181 LM 182
>Z69302-5|CAA93262.1| 189|Caenorhabditis elegans Hypothetical
protein F40F8.10 protein.
Length = 189
Score = 50.4 bits (115), Expect = 1e-06
Identities = 30/122 (24%), Positives = 61/122 (50%), Gaps = 1/122 (0%)
Frame = +3
Query: 195 EVKVMKKFCIQKREDYTKYNKLSRDIRELANKIKDLDPNNEFRTESSAQLLEKLYQIGLI 374
E+K++ F ++ + + + +R+ A ++ L+ + R LL +L +IG++
Sbjct: 27 ELKLIGTFGLKNKREVWRVKYTLAKVRKAARELLTLEDKDPKRLFEGNALLRRLVKIGVL 86
Query: 375 P-TRWDLALATNVSASSFCRRRLPVLMVRNKMSETIKEATKFIEQGHVRVGPEVVKDPAF 551
T+ L + F RRL + + ++++I A I+Q H+RV +VV P+F
Sbjct: 87 DETKMKLDYVLGLKVEDFLERRLQTQVFKLGLAKSIHHARILIKQHHIRVRRQVVDVPSF 146
Query: 552 LV 557
+V
Sbjct: 147 IV 148
>Z81118-4|CAB03327.1| 309|Caenorhabditis elegans Hypothetical
protein T10G3.4 protein.
Length = 309
Score = 32.7 bits (71), Expect = 0.24
Identities = 17/58 (29%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Frame = -1
Query: 329 LCPE-FIIWIEVFYLVCELSDITRQFVILCVILTLLYTKLFHNLHFTNIVIQLP*YKV 159
LCP +++ I +F +V L + FV+LC++LT +++K FH + ++ + Y +
Sbjct: 5 LCPSNYLLSINIFSIVLTLPMVII-FVLLCILLT-IHSKTFHPFFTLSFILLISSYAI 60
>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
Length = 6632
Score = 32.3 bits (70), Expect = 0.32
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = +3
Query: 186 NISEVKVMKKFCIQKREDYTKYNKLSRD-IRELANKIKDLDPNNEFRTESSAQLLEKLYQ 362
N E+K +F I+++ D TKY + ++ +R+ A+ K + N ESSAQL K +
Sbjct: 4718 NGQEIKPNSRFIIEQKTD-TKYQLVIKNAVRDDADTYKIVLENTAGEAESSAQLTVKKAK 4776
Query: 363 IGL 371
GL
Sbjct: 4777 AGL 4779
>AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated
protein 89, isoform e protein.
Length = 5992
Score = 32.3 bits (70), Expect = 0.32
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = +3
Query: 186 NISEVKVMKKFCIQKREDYTKYNKLSRD-IRELANKIKDLDPNNEFRTESSAQLLEKLYQ 362
N E+K +F I+++ D TKY + ++ +R+ A+ K + N ESSAQL K +
Sbjct: 4078 NGQEIKPNSRFIIEQKTD-TKYQLVIKNAVRDDADTYKIVLENTAGEAESSAQLTVKKAK 4136
Query: 363 IGL 371
GL
Sbjct: 4137 AGL 4139
>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
protein 89, isoform a protein.
Length = 6632
Score = 32.3 bits (70), Expect = 0.32
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = +3
Query: 186 NISEVKVMKKFCIQKREDYTKYNKLSRD-IRELANKIKDLDPNNEFRTESSAQLLEKLYQ 362
N E+K +F I+++ D TKY + ++ +R+ A+ K + N ESSAQL K +
Sbjct: 4718 NGQEIKPNSRFIIEQKTD-TKYQLVIKNAVRDDADTYKIVLENTAGEAESSAQLTVKKAK 4776
Query: 363 IGL 371
GL
Sbjct: 4777 AGL 4779
>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
protein 89, isoform g protein.
Length = 7122
Score = 32.3 bits (70), Expect = 0.32
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = +3
Query: 186 NISEVKVMKKFCIQKREDYTKYNKLSRD-IRELANKIKDLDPNNEFRTESSAQLLEKLYQ 362
N E+K +F I+++ D TKY + ++ +R+ A+ K + N ESSAQL K +
Sbjct: 4718 NGQEIKPNSRFIIEQKTD-TKYQLVIKNAVRDDADTYKIVLENTAGEAESSAQLTVKKAK 4776
Query: 363 IGL 371
GL
Sbjct: 4777 AGL 4779
>AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated
protein 89, isoform f protein.
Length = 7441
Score = 32.3 bits (70), Expect = 0.32
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = +3
Query: 186 NISEVKVMKKFCIQKREDYTKYNKLSRD-IRELANKIKDLDPNNEFRTESSAQLLEKLYQ 362
N E+K +F I+++ D TKY + ++ +R+ A+ K + N ESSAQL K +
Sbjct: 4078 NGQEIKPNSRFIIEQKTD-TKYQLVIKNAVRDDADTYKIVLENTAGEAESSAQLTVKKAK 4136
Query: 363 IGL 371
GL
Sbjct: 4137 AGL 4139
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 32.3 bits (70), Expect = 0.32
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = +3
Query: 186 NISEVKVMKKFCIQKREDYTKYNKLSRD-IRELANKIKDLDPNNEFRTESSAQLLEKLYQ 362
N E+K +F I+++ D TKY + ++ +R+ A+ K + N ESSAQL K +
Sbjct: 4718 NGQEIKPNSRFIIEQKTD-TKYQLVIKNAVRDDADTYKIVLENTAGEAESSAQLTVKKAK 4776
Query: 363 IGL 371
GL
Sbjct: 4777 AGL 4779
>AF068708-8|AAC17761.1| 327|Caenorhabditis elegans Hypothetical
protein C18G1.9 protein.
Length = 327
Score = 31.1 bits (67), Expect = 0.75
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = -1
Query: 320 EFIIWIE--VFYLVCELSDITRQFVILCVILTLLYTKLFHNLHFTNIVIQLP 171
+FI+ + VF+ V + +D+T QF I C++LT L K+ F + +P
Sbjct: 258 DFIVSVTKLVFHEVFKTADVTGQFEITCLMLTSLMNKVHRGDIFLPVKSSMP 309
>Z68104-1|CAA92112.1| 866|Caenorhabditis elegans Hypothetical
protein F08B12.1 protein.
Length = 866
Score = 30.7 bits (66), Expect = 0.99
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +3
Query: 210 KKFCIQKREDYTK--YNKLSRDIRELANKIKDLDPNNEFRTESSAQLLEKLYQIGL 371
KK+ + K +D+ K YN+L +R + ++ P + F + S + LEKL + +
Sbjct: 572 KKYHLNKLQDFEKDAYNQLQISLRTTMENMPEIRPLDAFISRSELRDLEKLASVNV 627
>U64840-5|AAB04963.2| 346|Caenorhabditis elegans Hypothetical
protein ZC317.6 protein.
Length = 346
Score = 30.7 bits (66), Expect = 0.99
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = -1
Query: 320 EFIIWIE--VFYLVCELSDITRQFVILCVILTLLYTKLFHNLHFTNIVIQLP 171
+FI+ + VF+ V + +D+T QF I C++LT L K+ F I +P
Sbjct: 258 DFIVSVTKLVFHEVFKTADVTGQFEITCLMLTSLTNKVHKGGIFLPIKSSMP 309
>U53141-6|AAA96108.1| 346|Caenorhabditis elegans Hypothetical
protein C14C11.1 protein.
Length = 346
Score = 30.7 bits (66), Expect = 0.99
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = -1
Query: 320 EFIIWIE--VFYLVCELSDITRQFVILCVILTLLYTKLFHNLHFTNIVIQLP 171
+FI+ + VF+ V + +D+T QF I C++LT L K+ F I +P
Sbjct: 258 DFIVSVTKLVFHEVFKTADVTGQFEITCLMLTSLTNKVHKGGIFLPIKSSMP 309
>U00037-2|AAA50662.1| 212|Caenorhabditis elegans Hypothetical
protein T20H4.5 protein.
Length = 212
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +3
Query: 306 PNNEFRTESSAQLLEKLYQIGLIPTRWDLALATNVSASSFCR 431
PN E+ TE+ +LL ++ L RW+ LA+N+ A R
Sbjct: 171 PNFEYSTETHEELLYNKEKLLLNGDRWEPELASNLQAEYLYR 212
>AF140272-1|AAD34863.1| 212|Caenorhabditis elegans NADH
oxidoreductase complex I 23.8kDa subunit protein.
Length = 212
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +3
Query: 306 PNNEFRTESSAQLLEKLYQIGLIPTRWDLALATNVSASSFCR 431
PN E+ TE+ +LL ++ L RW+ LA+N+ A R
Sbjct: 171 PNFEYSTETHEELLYNKEKLLLNGDRWEPELASNLQAEYLYR 212
>AC006607-7|AAL00855.1| 789|Caenorhabditis elegans Hypothetical
protein C09E7.9 protein.
Length = 789
Score = 27.9 bits (59), Expect = 6.9
Identities = 20/64 (31%), Positives = 33/64 (51%)
Frame = +3
Query: 174 KLDNNISEVKVMKKFCIQKREDYTKYNKLSRDIRELANKIKDLDPNNEFRTESSAQLLEK 353
+L ISE+++ K ++ E K +K + D LAN+I L E T S QL ++
Sbjct: 408 QLSGQISELEIQLKSELKNVEHLNKEHKKAID---LANEISKLKTEIERETSISKQLEKE 464
Query: 354 LYQI 365
+ Q+
Sbjct: 465 ISQL 468
>Z73423-7|CAL36497.1| 567|Caenorhabditis elegans Hypothetical
protein F38B2.1c protein.
Length = 567
Score = 27.5 bits (58), Expect = 9.2
Identities = 24/86 (27%), Positives = 47/86 (54%), Gaps = 14/86 (16%)
Frame = +3
Query: 144 LLKKVDFISWKLDNNISEVKVM-KKFCIQKREDYTKYNKLS---RDIRELANKIKDLDPN 311
LL+++DF+ DN I E++ + + + ++ K N+LS RDIRE +++ ++ N
Sbjct: 230 LLEEIDFLRRVHDNEIKELQTLASRDTTPENREFFK-NELSSAIRDIREEYDQVNNVHRN 288
Query: 312 N----------EFRTESSAQLLEKLY 359
+ E +T+S+ Q +E+ Y
Sbjct: 289 DMESWYRLKVQEIQTQSARQNMEQGY 314
>Z73423-6|CAD44093.1| 575|Caenorhabditis elegans Hypothetical
protein F38B2.1b protein.
Length = 575
Score = 27.5 bits (58), Expect = 9.2
Identities = 24/86 (27%), Positives = 47/86 (54%), Gaps = 14/86 (16%)
Frame = +3
Query: 144 LLKKVDFISWKLDNNISEVKVM-KKFCIQKREDYTKYNKLS---RDIRELANKIKDLDPN 311
LL+++DF+ DN I E++ + + + ++ K N+LS RDIRE +++ ++ N
Sbjct: 238 LLEEIDFLRRVHDNEIKELQTLASRDTTPENREFFK-NELSSAIRDIREEYDQVNNVHRN 296
Query: 312 N----------EFRTESSAQLLEKLY 359
+ E +T+S+ Q +E+ Y
Sbjct: 297 DMESWYRLKVQEIQTQSARQNMEQGY 322
>Z73423-5|CAA97777.3| 575|Caenorhabditis elegans Hypothetical
protein F38B2.1a protein.
Length = 575
Score = 27.5 bits (58), Expect = 9.2
Identities = 24/86 (27%), Positives = 47/86 (54%), Gaps = 14/86 (16%)
Frame = +3
Query: 144 LLKKVDFISWKLDNNISEVKVM-KKFCIQKREDYTKYNKLS---RDIRELANKIKDLDPN 311
LL+++DF+ DN I E++ + + + ++ K N+LS RDIRE +++ ++ N
Sbjct: 238 LLEEIDFLRRVHDNEIKELQTLASRDTTPENREFFK-NELSSAIRDIREEYDQVNNVHRN 296
Query: 312 N----------EFRTESSAQLLEKLY 359
+ E +T+S+ Q +E+ Y
Sbjct: 297 DMESWYRLKVQEIQTQSARQNMEQGY 322
>Z50045-6|CAL36494.1| 567|Caenorhabditis elegans Hypothetical
protein F38B2.1c protein.
Length = 567
Score = 27.5 bits (58), Expect = 9.2
Identities = 24/86 (27%), Positives = 47/86 (54%), Gaps = 14/86 (16%)
Frame = +3
Query: 144 LLKKVDFISWKLDNNISEVKVM-KKFCIQKREDYTKYNKLS---RDIRELANKIKDLDPN 311
LL+++DF+ DN I E++ + + + ++ K N+LS RDIRE +++ ++ N
Sbjct: 230 LLEEIDFLRRVHDNEIKELQTLASRDTTPENREFFK-NELSSAIRDIREEYDQVNNVHRN 288
Query: 312 N----------EFRTESSAQLLEKLY 359
+ E +T+S+ Q +E+ Y
Sbjct: 289 DMESWYRLKVQEIQTQSARQNMEQGY 314
>Z50045-5|CAD44129.1| 575|Caenorhabditis elegans Hypothetical
protein F38B2.1b protein.
Length = 575
Score = 27.5 bits (58), Expect = 9.2
Identities = 24/86 (27%), Positives = 47/86 (54%), Gaps = 14/86 (16%)
Frame = +3
Query: 144 LLKKVDFISWKLDNNISEVKVM-KKFCIQKREDYTKYNKLS---RDIRELANKIKDLDPN 311
LL+++DF+ DN I E++ + + + ++ K N+LS RDIRE +++ ++ N
Sbjct: 238 LLEEIDFLRRVHDNEIKELQTLASRDTTPENREFFK-NELSSAIRDIREEYDQVNNVHRN 296
Query: 312 N----------EFRTESSAQLLEKLY 359
+ E +T+S+ Q +E+ Y
Sbjct: 297 DMESWYRLKVQEIQTQSARQNMEQGY 322
>Z50045-4|CAA90365.3| 575|Caenorhabditis elegans Hypothetical
protein F38B2.1a protein.
Length = 575
Score = 27.5 bits (58), Expect = 9.2
Identities = 24/86 (27%), Positives = 47/86 (54%), Gaps = 14/86 (16%)
Frame = +3
Query: 144 LLKKVDFISWKLDNNISEVKVM-KKFCIQKREDYTKYNKLS---RDIRELANKIKDLDPN 311
LL+++DF+ DN I E++ + + + ++ K N+LS RDIRE +++ ++ N
Sbjct: 238 LLEEIDFLRRVHDNEIKELQTLASRDTTPENREFFK-NELSSAIRDIREEYDQVNNVHRN 296
Query: 312 N----------EFRTESSAQLLEKLY 359
+ E +T+S+ Q +E+ Y
Sbjct: 297 DMESWYRLKVQEIQTQSARQNMEQGY 322
>Z12017-2|CAA78048.1| 455|Caenorhabditis elegans Hypothetical
protein R08D7.2 protein.
Length = 455
Score = 27.5 bits (58), Expect = 9.2
Identities = 24/101 (23%), Positives = 44/101 (43%), Gaps = 4/101 (3%)
Frame = -2
Query: 658 YNISKSSL-ISLYS-RTCFLIAEPSTHVTKSSSDLLTRNAGSFTTSGPTLT--CPCSINF 491
YN+ + L I L+S R ++ E H+T + D+L+R A +F +T IN
Sbjct: 340 YNVKEKRLNIFLHSIRNHWMDLEARLHLTPTRRDILSRVASTFQLDSENITGWTKREINS 399
Query: 490 VASLIVSDILFRTINTGSLRLQKELAETLVAKARSHLVGIN 368
+ + I + G +K+ A + + L G++
Sbjct: 400 IVIALFIVICLVDVELGDDYFKKDNASPELTAISNELCGLD 440
>X70834-1|CAA50182.1| 592|Caenorhabditis elegans Cytoplasmic
intermediate filament(IF) protein protein.
Length = 592
Score = 27.5 bits (58), Expect = 9.2
Identities = 24/86 (27%), Positives = 47/86 (54%), Gaps = 14/86 (16%)
Frame = +3
Query: 144 LLKKVDFISWKLDNNISEVKVM-KKFCIQKREDYTKYNKLS---RDIRELANKIKDLDPN 311
LL+++DF+ DN I E++ + + + ++ K N+LS RDIRE +++ ++ N
Sbjct: 257 LLEEIDFLRRVHDNEIKELQTLASRDTTPENREFFK-NELSSAIRDIREEYDQVNNVHRN 315
Query: 312 N----------EFRTESSAQLLEKLY 359
+ E +T+S+ Q +E+ Y
Sbjct: 316 DMESWYRLKVQEIQTQSARQNMEQGY 341
>U49941-8|AAB53876.1| 2427|Caenorhabditis elegans Spectrin protein 1
protein.
Length = 2427
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +3
Query: 246 KYNKLSRDIRELANKIKDLDPNNEFRTESSAQLLEKLYQI 365
K+ + RD+ L +KIK LD +S + E++Y +
Sbjct: 1233 KHEGVERDLAALGDKIKSLDEKANRLRQSHPEAAEQIYDL 1272
>L10986-9|AAK93847.2| 808|Caenorhabditis elegans Spindle assembly
abnormal protein 4 protein.
Length = 808
Score = 27.5 bits (58), Expect = 9.2
Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Frame = +3
Query: 195 EVKVMKKFCIQKREDYTK-YNKLSRDIRELANKIKDL-----DPNNEFRTESSAQLLEKL 356
E + KKF + +EDY + Y KL RD R+L K L + N EF TE+ A L +KL
Sbjct: 380 EEEFEKKF-EKIKEDYDELYEKLKRDQRDLERDQKILKKGTGERNKEF-TETIATLRDKL 437
>AY204179-1|AAO39183.1| 486|Caenorhabditis elegans nuclear receptor
NHR-80 protein.
Length = 486
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = -2
Query: 643 SSLISLYSRTCFLIAEPSTHVTKSSSDLLTRNAGSFTTSGPTLTCPCS 500
+SL L F+I P+ SS+ +++T GP+ PCS
Sbjct: 137 NSLEDLEQDNEFVIKTPTPRKISSSTSFSASTTTNYSTPGPSPMAPCS 184
>AJ539470-1|CAD62434.1| 808|Caenorhabditis elegans SAS-4 protein
protein.
Length = 808
Score = 27.5 bits (58), Expect = 9.2
Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Frame = +3
Query: 195 EVKVMKKFCIQKREDYTK-YNKLSRDIRELANKIKDL-----DPNNEFRTESSAQLLEKL 356
E + KKF + +EDY + Y KL RD R+L K L + N EF TE+ A L +KL
Sbjct: 380 EEEFEKKF-EKIKEDYDELYEKLKRDQRDLERDQKILKKGTGERNKEF-TETIATLRDKL 437
>AF332209-1|AAK17980.1| 350|Caenorhabditis elegans nuclear receptor
NHR-80 protein.
Length = 350
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = -2
Query: 643 SSLISLYSRTCFLIAEPSTHVTKSSSDLLTRNAGSFTTSGPTLTCPCS 500
+SL L F+I P+ SS+ +++T GP+ PCS
Sbjct: 1 NSLEDLEQDNEFVIKTPTPRKISSSTSFSASTTTNYSTPGPSPMAPCS 48
>AF078783-3|AAN63404.1| 504|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 80, isoform b protein.
Length = 504
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = -2
Query: 643 SSLISLYSRTCFLIAEPSTHVTKSSSDLLTRNAGSFTTSGPTLTCPCS 500
+SL L F+I P+ SS+ +++T GP+ PCS
Sbjct: 155 NSLEDLEQDNEFVIKTPTPRKISSSTSFSASTTTNYSTPGPSPMAPCS 202
>AF078783-2|AAK82901.1| 486|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 80, isoform a protein.
Length = 486
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = -2
Query: 643 SSLISLYSRTCFLIAEPSTHVTKSSSDLLTRNAGSFTTSGPTLTCPCS 500
+SL L F+I P+ SS+ +++T GP+ PCS
Sbjct: 137 NSLEDLEQDNEFVIKTPTPRKISSSTSFSASTTTNYSTPGPSPMAPCS 184
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,304,856
Number of Sequences: 27780
Number of extensions: 320866
Number of successful extensions: 1109
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1108
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -