Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2h17
         (184 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1782.05 |||phosphotyrosyl phosphatase activator homolog|Schi...    23   5.3  
SPAC9E9.02 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         22   9.3  
SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr 1|||Ma...    22   9.3  

>SPAC1782.05 |||phosphotyrosyl phosphatase activator
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 352

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 116 RAKFVVKTYVYFINKYSFSV 175
           RA ++   YVYF+NK   SV
Sbjct: 234 RADYMYLGYVYFLNKLKPSV 253


>SPAC9E9.02 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 98

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = -2

Query: 162 YLFIKYTYVLTTNFAR*FKLIFININLNKYELIFFFYNP 46
           +  +K  ++LT  F+    + +I  +   YE+I    NP
Sbjct: 13  HCLLKKNFLLTIRFSSLVSIQYIPFSNRLYEIISIALNP 51


>SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 835

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -2

Query: 87  NLNKYELIFFFYNP*STVDP 28
           N+ K ++++  Y P  TVDP
Sbjct: 787 NIGKKDMVYNSYMPKMTVDP 806


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 601,043
Number of Sequences: 5004
Number of extensions: 8188
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 2,362,478
effective HSP length: 41
effective length of database: 2,157,314
effective search space used: 40988966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)