Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2h17
         (184 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0019 - 10656005-10657511,10657712-10658739                       27   2.1  
07_03_0544 + 19309026-19310105                                         25   8.6  

>06_02_0019 - 10656005-10657511,10657712-10658739
          Length = 844

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 177 FTENEYLFIKYTYVLTTNFAR*FKLIFININLNKY 73
           F+ N Y F  + Y  TT+F     LI + +N N Y
Sbjct: 540 FSNNPYRFKAFFYCNTTSFMSSIALIILLVNPNLY 574


>07_03_0544 + 19309026-19310105
          Length = 359

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 3   MSQMHQQQKDQLLTMGY 53
           M Q HQ Q D LL +GY
Sbjct: 200 MHQQHQSQVDHLLGLGY 216


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,253,914
Number of Sequences: 37544
Number of extensions: 36789
Number of successful extensions: 52
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 14,793,348
effective HSP length: 40
effective length of database: 13,291,588
effective search space used: 265831760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)