Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2h17
         (184 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53181-7|AAA93487.1|  472|Caenorhabditis elegans Hypothetical pr...    26   4.1  
AL033514-27|CAA22088.1|  363|Caenorhabditis elegans Hypothetical...    25   7.1  

>U53181-7|AAA93487.1|  472|Caenorhabditis elegans Hypothetical
           protein F36D4.4 protein.
          Length = 472

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -2

Query: 177 FTENEYLFIKYTYVLTTNFAR*FKLIFINI 88
           FT NEY+ I+Y       F R F LI + I
Sbjct: 127 FTTNEYIVIRYPLHYRRYFRRKFVLIILAI 156


>AL033514-27|CAA22088.1|  363|Caenorhabditis elegans Hypothetical
           protein Y75B8A.28 protein.
          Length = 363

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 83  KLILMNINLNYRAKFVVKTYVYFINKY 163
           K+    I+ NY AK +    VY +NKY
Sbjct: 335 KMDFETIHYNYEAKVLEYVSVYCVNKY 361


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,264,121
Number of Sequences: 27780
Number of extensions: 44612
Number of successful extensions: 75
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 12,740,198
effective HSP length: 41
effective length of database: 11,601,218
effective search space used: 220423142
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)