Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2h16
         (630 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.06 |rps2801|rps28-1|40S ribosomal protein S28|Schizosa...    74   1e-14
SPCC285.15c |rps2802|rps28-2, rps28|40S ribosomal protein S28|Sc...    74   1e-14
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    27   3.0  
SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom...    27   3.0  
SPBC365.02c |cox10||protoheme IX farnesyltransferase|Schizosacch...    27   3.0  
SPBC2A9.09 |||phosducin family protein|Schizosaccharomyces pombe...    27   3.0  
SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces pom...    26   5.2  
SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces pomb...    25   9.0  
SPCC777.15 |||tRNA dihydrouridine synthase Dus4 |Schizosaccharom...    25   9.0  

>SPAC25G10.06 |rps2801|rps28-1|40S ribosomal protein
           S28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 68

 Score = 74.1 bits (174), Expect = 1e-14
 Identities = 35/49 (71%), Positives = 42/49 (85%)
 Frame = +2

Query: 302 PNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDIL 448
           P  LA+V+KVLGRTGS+G  TQV+VEF+ +TSR IIRNVKGPVR+ DIL
Sbjct: 7   PVKLAKVIKVLGRTGSRGGVTQVRVEFMDDTSRSIIRNVKGPVREDDIL 55


>SPCC285.15c |rps2802|rps28-2, rps28|40S ribosomal protein
           S28|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 68

 Score = 74.1 bits (174), Expect = 1e-14
 Identities = 35/49 (71%), Positives = 42/49 (85%)
 Frame = +2

Query: 302 PNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDIL 448
           P  LA+V+KVLGRTGS+G  TQV+VEF+ +TSR IIRNVKGPVR+ DIL
Sbjct: 7   PVKLAKVIKVLGRTGSRGGVTQVRVEFMDDTSRSIIRNVKGPVREDDIL 55


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1516

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 20/61 (32%), Positives = 27/61 (44%)
 Frame = +2

Query: 140  FFSQTRVLKHGACISFNKR*LRKFV*VEIPSKHASFGARVLIVLSSILQAKMDKPNVLAR 319
            F  +    K G  IS+N   L+ +  +E     A      L+  S ILQ   D PN +AR
Sbjct: 1330 FIDERGSWKRGTNISYNYHVLKDWC-LESGVPEAYLQLEELLQTSKILQFVKDDPNYVAR 1388

Query: 320  V 322
            V
Sbjct: 1389 V 1389


>SPAC1556.02c |sdh1||succinate dehydrogenase
           Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +3

Query: 72  YRQSSPPVRLTGDVYVVDKNEKVFLVKHVFSNTVPAYLLIRG 197
           Y     P R TG+V  +D+N K  +V  +++    A + + G
Sbjct: 401 YNMGGIPTRFTGEVLTIDENGKDKIVPGLYAAGEAACVSVHG 442


>SPBC365.02c |cox10||protoheme IX
           farnesyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 387

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 198 HLLLKDMQAPCLRTRV*LKKLFRSYQQHTRRPS 100
           H+L K     C+ TR  LK+ +  + +HT + S
Sbjct: 3   HILNKGSSKSCIYTRPCLKRFYHQHYEHTGKLS 35


>SPBC2A9.09 |||phosducin family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 233

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 10/25 (40%), Positives = 19/25 (76%)
 Frame = +3

Query: 117 VVDKNEKVFLVKHVFSNTVPAYLLI 191
           V D +++VF+V H+F +++PA  L+
Sbjct: 101 VTDASKEVFVVVHMFQDSLPACKLL 125


>SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 166

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = -3

Query: 424 SFHVPDDLTAGLPNELDLHLSTLALRTSTAEYFHDTSKNVGFI 296
           S H+P   ++ + N L  + +++++R  T  Y+H   K +  I
Sbjct: 57  SIHMPAPFSSVVRNALKANPNSVSIRDITTHYYHFAEKMLHLI 99


>SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 519

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -2

Query: 314 QERWVYPFWLVISSLIQLTHVHQSWRVSKGFQLRRTFVITSY 189
           ++ WV P  L+ISS + L   +    +SKG     +F   S+
Sbjct: 117 RKTWVVPCMLLISSTLLLFSYNVDTWISKGSSYINSFTTWSF 158


>SPCC777.15 |||tRNA dihydrouridine synthase Dus4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 326

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/45 (22%), Positives = 24/45 (53%)
 Frame = +2

Query: 266 VLSSILQAKMDKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSR 400
           +   I  A +D+P  + ++V+ +  T  +  CT+VK+    + ++
Sbjct: 114 IQEGIGSALLDEPEKVHKLVRAVKSTLGESFCTEVKIRIAKDLNK 158


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,620,498
Number of Sequences: 5004
Number of extensions: 53206
Number of successful extensions: 139
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)