Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2h16
         (630 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0172 + 13804803-13805293,13805423-13805537,13805766-138058...    42   3e-04
03_01_0468 - 3612079-3612197,3612679-3612850                           36   0.035
11_08_0007 + 27551173-27551828,27552071-27552282,27553371-275535...    31   0.75 
06_03_1195 + 28311450-28312294,28312418-28312966,28314319-28314499     28   7.0  

>10_07_0172 +
           13804803-13805293,13805423-13805537,13805766-13805831,
           13805921-13806009,13806103-13806193,13806312-13806458,
           13806575-13806667,13806745-13806846,13806957-13807541,
           13808523-13808813,13808866-13808937
          Length = 713

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 21/59 (35%), Positives = 29/59 (49%)
 Frame = -3

Query: 487 SQPPSFTFRFKKSEDVSVTDRSFHVPDDLTAGLPNELDLHLSTLALRTSTAEYFHDTSK 311
           +QPP    R ++ EDV++TDR+  VP D T  +  EL   L  L      A + H   K
Sbjct: 605 AQPPGLPLRLEQGEDVALTDRALDVPHDETVLVVEELHSDLGHLTPGAGAAHHLHHDGK 663


>03_01_0468 - 3612079-3612197,3612679-3612850
          Length = 96

 Score = 35.5 bits (78), Expect = 0.035
 Identities = 16/44 (36%), Positives = 26/44 (59%)
 Frame = -3

Query: 487 SQPPSFTFRFKKSEDVSVTDRSFHVPDDLTAGLPNELDLHLSTL 356
           ++PP      ++ EDV++++R+  VP D T  +  ELD HL  L
Sbjct: 10  AKPPGLPLGLEQGEDVALSNRALDVPHDETVLVIQELDSHLGHL 53


>11_08_0007 +
           27551173-27551828,27552071-27552282,27553371-27553550,
           27555154-27556187
          Length = 693

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
 Frame = +3

Query: 84  SPPVRLTGDVYVVD---KNEKVFLVKHVFSNTVPAYLLIRGDYESSSELKSLRNTPAL 248
           +PP   TG+V + D   +  ++ L  HV SN   +Y     +YES+S    LR+TP L
Sbjct: 68  TPPRPYTGNVEIKDISLEAGEIRLYTHVVSNCYTSYNTT--EYESTSSQDDLRDTPFL 123


>06_03_1195 + 28311450-28312294,28312418-28312966,28314319-28314499
          Length = 524

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 141 KLFRSYQQHTRRPSNGPAANSAGTRAGW 58
           +L    +Q+   P  GPA NS+G  AGW
Sbjct: 334 RLSEEDKQNMPLPVQGPACNSSGHLAGW 361


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,500,817
Number of Sequences: 37544
Number of extensions: 328787
Number of successful extensions: 803
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)