Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2g23
         (647 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    25   0.54 
AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    22   3.8  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    22   5.0  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    22   5.0  
AF265297-1|AAG17640.1|  125|Tribolium castaneum putative cytochr...    22   5.0  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    21   8.7  
AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    21   8.7  

>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 25.0 bits (52), Expect = 0.54
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 271 THNGPTAQDSVTSCTYYPVHT 333
           TH+G    DSVTS  ++ VH+
Sbjct: 174 THHGGIKSDSVTSNAWWDVHS 194


>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = -2

Query: 220 PYIPSLTQIHAVLSKYPRKPKLFRAFWNLIVSVSHHSLFFTMF 92
           PY+ S T I  V+S        F  FW ++ S    S FF  F
Sbjct: 46  PYLKSYTYIKLVVSVLMDFIAYFFNFWTILFS---RSDFFQQF 85


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 232 YAKGEWSPC*WPPTHN 279
           YAKG + P   PPT++
Sbjct: 429 YAKGPYQPSQAPPTYD 444


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 232 YAKGEWSPC*WPPTHN 279
           YAKG + P   PPT++
Sbjct: 429 YAKGPYQPSQAPPTYD 444


>AF265297-1|AAG17640.1|  125|Tribolium castaneum putative cytochrome
           P450 monooxigenase protein.
          Length = 125

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -2

Query: 196 IHAVLSKYPRKPKLFRAFWNLIVSVSHHSL 107
           I  VL  YP  P + R+    IV+ S H L
Sbjct: 51  IKEVLRLYPSVPFIARSLGEDIVTYSGHKL 80


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +1

Query: 307 SCTYYPVHTLRNTCRV 354
           SC Y P    ++TC++
Sbjct: 115 SCLYVPPGIFKSTCKI 130


>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory receptor
           candidate 60 protein.
          Length = 364

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -2

Query: 136 LIVSVSHHSLFFTMF 92
           ++V+V  H  FFT+F
Sbjct: 112 MVVTVDLHVFFFTLF 126


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,216
Number of Sequences: 336
Number of extensions: 3068
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16656800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)