Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2g23
         (647 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr...    27   1.8  
SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual      27   3.1  
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb...    27   3.1  
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ...    25   7.1  
SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyc...    25   9.4  
SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|ch...    25   9.4  

>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 515

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 369 EMDTRVDWSMLQKSVYEDINNEEYDYIPEMYDKI 470
           E    +D    +K   ED  N E +YIPE Y+++
Sbjct: 174 ESSLSLDSGESEKKSEEDNGNGEQNYIPEQYERL 207


>SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 408

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3

Query: 414 YEDINNEEYDYIPEMYDKIYGDSSSSE 494
           Y+D N+ +Y++  E  DK YG  ++S+
Sbjct: 339 YDDSNSSQYNFKWEFDDKTYGPYTASQ 365


>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 200

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = +3

Query: 294 GFSNVMHLLSSAYLK-KYMSCVSSLFEMDTRVDWSMLQKSVYEDINNEEYDYI-PEMYDK 467
           G ++++ + +  Y   +Y+  V   +  D RVD   +Q ++++    EEY+ + P  Y K
Sbjct: 20  GKTSLLSVFTLGYFPTEYVPTVFENYVSDCRVDGKSVQLALWDTAGQEEYERLRPMSYAK 79

Query: 468 IY 473
            +
Sbjct: 80  AH 81


>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +3

Query: 78  RVQFMNIVKKSEWCETLTIKFQKALNNLGFLGYFDKTACICVRDGMYGA 224
           R++ +  V+ ++   +LT    K  N  G +G+F      C+R   YGA
Sbjct: 43  RMKIIFQVQNNKEYTSLTSTLVKIWNREGLIGFFRGNGTNCLRAFPYGA 91


>SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 218

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = -2

Query: 232 IKGAPYIPSLTQIHAVLSKYP-RKPKLFRAFWNLI 131
           +K  P I      HA   +Y  RK + F+A WN+I
Sbjct: 172 VKSKPIIGIDAWEHAYYPQYENRKAEYFKAIWNVI 206


>SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 445

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = +3

Query: 261 MAPDAQWTNCTGFSNVMHLLSSAYLKKYMSCVSSLFEMDTRVDWSMLQKSV-YEDI 425
           MA   +  N     N +  LSS+ L     C     +M +   WS+++ S  YE++
Sbjct: 88  MAETTRTANSNSIHNQLKDLSSSILSYAQDCNYPFSQMPSSSQWSIVRNSSWYENL 143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,589,547
Number of Sequences: 5004
Number of extensions: 51146
Number of successful extensions: 120
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)