Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2g23
         (647 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0940 + 26145746-26145879,26146740-26146821,26147349-261474...    29   4.2  
10_08_0615 - 19259402-19259597,19260248-19260735,19264895-19265140     27   9.7  
06_02_0032 + 10775031-10775520,10775661-10776246,10776333-107769...    27   9.7  

>06_03_0940 +
           26145746-26145879,26146740-26146821,26147349-26147427,
           26147527-26147624,26148392-26148479,26148589-26148686,
           26148881-26148982,26149237-26149281,26150535-26150574,
           26150988-26151074,26151254-26151330,26151746-26151808,
           26152650-26152766,26152905-26153116,26153690-26153785,
           26153869-26153935,26154028-26154081
          Length = 512

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -3

Query: 486 TRSPRIFCHTFLECNRILHY*YLHRLTSVASTNLHEYPFQI 364
           T+  R F HTF E + ++H   L +L  + S +  EY +++
Sbjct: 96  TQEARSFFHTFHEDHELMHSRDLQKLEGILSPSHLEYSYEL 136


>10_08_0615 - 19259402-19259597,19260248-19260735,19264895-19265140
          Length = 309

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -2

Query: 301 LNPVQLVHCASGAINMATIRPLHIKGAPYIPSLTQIHAVLSKYP 170
           ++P     CA  A+    +   HI GA   PSLT   A L  +P
Sbjct: 111 ISPFGNAACAGLAVTTIILSTGHISGAHLNPSLTIAFAALRHFP 154


>06_02_0032 +
           10775031-10775520,10775661-10776246,10776333-10776973,
           10777270-10777973
          Length = 806

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +1

Query: 262 WPPTHNGPTAQDSVTSCTYYPVHTLRNTCRV*AVYLKWILV 384
           W  T  G  A DS+   TYYP + +   C   A  L  I++
Sbjct: 49  WQDTEAGHLAGDSIIRDTYYPRYLVFFYCNAAAFVLSIIVI 89


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,739,412
Number of Sequences: 37544
Number of extensions: 306009
Number of successful extensions: 638
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)