Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2g23
         (647 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical p...    28   6.6  
AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator comp...    28   6.6  

>Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical
           protein F47A4.2 protein.
          Length = 3498

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = +3

Query: 288 CTGFSNVMHLLSSAYLKKYMSCVS--SLFEMDTRVDWSMLQKSVYEDINNEEYDYIP 452
           C+ FS  +HLLSS  + +YM+CV+  S    D  V     +  +   +     DY+P
Sbjct: 816 CSQFSEALHLLSS--MVQYMACVTPESFVWNDLSVQQEERRHRILPQLCGSPLDYLP 870


>Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical protein
            K08F8.6 protein.
          Length = 2862

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +3

Query: 282  TNCT-GFSNVMHLLSSAYLKKYMSCVSSLFEMD 377
            TNCT GFS + H        +Y+SC S LFE D
Sbjct: 1602 TNCTCGFSAIRH--------RYLSCCSGLFEED 1626


>Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical
            protein K08F8.6 protein.
          Length = 2862

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +3

Query: 282  TNCT-GFSNVMHLLSSAYLKKYMSCVSSLFEMD 377
            TNCT GFS + H        +Y+SC S LFE D
Sbjct: 1602 TNCTCGFSAIRH--------RYLSCCSGLFEED 1626


>AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator complex
            subunit Med13 protein.
          Length = 2862

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +3

Query: 282  TNCT-GFSNVMHLLSSAYLKKYMSCVSSLFEMD 377
            TNCT GFS + H        +Y+SC S LFE D
Sbjct: 1602 TNCTCGFSAIRH--------RYLSCCSGLFEED 1626


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,362,813
Number of Sequences: 27780
Number of extensions: 290548
Number of successful extensions: 699
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)