Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2g19
         (698 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    23   2.4  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    23   3.2  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    22   4.2  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    21   9.7  

>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +2

Query: 407 ETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPEFVDMS 523
           +TLG   N I EP+ +     T K ++  A AP   D++
Sbjct: 380 QTLGGSSNEIVEPVPQPVEEVTQKPSSTKAPAPPSRDLT 418


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 555 KSSICSLLMPKEERLGCLAELVWAKLY*LWN*STMLP 665
           + S+ +LL    E + C++E VW+KL    N    LP
Sbjct: 97  QQSVTALLDTGSE-VSCISEEVWSKLIETGNKPPTLP 132


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 14/53 (26%), Positives = 27/53 (50%)
 Frame = -3

Query: 375 ESSTGCPRTKPSVPSMAMVRTVFSPKCWATSSTRRGDRFCTSRAFRIGGRLSS 217
           E++T CP  K +V     V++  +   W T+ +   D   T+   +IG ++S+
Sbjct: 122 ENTTNCPEQKNTVTVTFTVQSDDTTLNWGTNESYNLD--LTTTGNQIGVQISA 172


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
 Frame = +1

Query: 526 AAGDSRNWYKSRRSARSLCQRR--KDWVVWRSWCGQN 630
           +AGD  + Y    S     + R  +   +W  WC QN
Sbjct: 542 SAGDDYDIYTRLVSFSDRLKSRGIRTAAIWPLWCSQN 578


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,588
Number of Sequences: 336
Number of extensions: 3776
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)