Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2g19
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U10402-2|AAA19068.2|  538|Caenorhabditis elegans Atp synthase su...   257   5e-69
AL023815-4|CAF31480.1|  511|Caenorhabditis elegans Hypothetical ...    64   9e-11
AL023815-1|CAA19429.1|  538|Caenorhabditis elegans Hypothetical ...    64   9e-11
U41015-2|AAA82311.1|  491|Caenorhabditis elegans Vacuolar h atpa...    44   8e-05
AL023815-3|CAD92384.1|  503|Caenorhabditis elegans Hypothetical ...    44   1e-04
AC006708-2|AAF60418.1|  501|Caenorhabditis elegans Temporarily a...    40   0.001
AL033512-1|CAA22076.1|  606|Caenorhabditis elegans Hypothetical ...    32   0.45 
U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical pr...    31   1.0  
U42830-4|AAC48277.1|  487|Caenorhabditis elegans Neuronal igcam ...    29   2.4  
Z70684-5|CAA94600.1|  233|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z70684-3|CAA94598.1|  233|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AL132898-6|CAC14409.1|  187|Caenorhabditis elegans Hypothetical ...    28   7.4  
AL132898-5|CAC14408.1|  316|Caenorhabditis elegans Hypothetical ...    28   7.4  
Z78418-3|CAB01697.1|  932|Caenorhabditis elegans Hypothetical pr...    27   9.8  
U42831-1|AAA83513.2|  614|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>U10402-2|AAA19068.2|  538|Caenorhabditis elegans Atp synthase
           subunit protein 2 protein.
          Length = 538

 Score =  257 bits (630), Expect = 5e-69
 Identities = 126/164 (76%), Positives = 137/164 (83%)
 Frame = +2

Query: 206 DVQFEDNLPPILNALEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSP 385
           DVQF++NLPPILN LEV  RSPRL+LEV+QHLG+N VR IAMDGTEGLVRGQPV D+G P
Sbjct: 81  DVQFDENLPPILNGLEVVGRSPRLILEVSQHLGDNVVRCIAMDGTEGLVRGQPVADTGDP 140

Query: 386 IRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVD 565
           I+IPVG ETLGRI+NVIGEPIDERGPI +   AAIHAEAPEFV+MSV+QEILVTGIKVVD
Sbjct: 141 IKIPVGPETLGRIMNVIGEPIDERGPIASKNFAAIHAEAPEFVEMSVEQEILVTGIKVVD 200

Query: 566 LLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAG 697
           LLAPYA               TVLIMELINNVAKAHGGYSVFAG
Sbjct: 201 LLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG 244


>AL023815-4|CAF31480.1|  511|Caenorhabditis elegans Hypothetical
           protein H28O16.1d protein.
          Length = 511

 Score = 64.1 bits (149), Expect = 9e-11
 Identities = 30/97 (30%), Positives = 53/97 (54%)
 Frame = +2

Query: 287 VAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPI 466
           +A +L  + V  +     + +  G  V  +G+ + +PVG   LGR+++ +G PID +GPI
Sbjct: 63  MAMNLDVDNVGVVVFGNDKVIREGDIVKRTGAIVDVPVGDGLLGRVVDALGNPIDGKGPI 122

Query: 467 PTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAP 577
              + + +  +AP  +     +E +VTG+K VD L P
Sbjct: 123 ANARRSRVEVKAPGIIPRLSVREPMVTGVKAVDSLVP 159


>AL023815-1|CAA19429.1|  538|Caenorhabditis elegans Hypothetical
           protein H28O16.1a protein.
          Length = 538

 Score = 64.1 bits (149), Expect = 9e-11
 Identities = 30/97 (30%), Positives = 53/97 (54%)
 Frame = +2

Query: 287 VAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPI 466
           +A +L  + V  +     + +  G  V  +G+ + +PVG   LGR+++ +G PID +GPI
Sbjct: 90  MAMNLDVDNVGVVVFGNDKVIREGDIVKRTGAIVDVPVGDGLLGRVVDALGNPIDGKGPI 149

Query: 467 PTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAP 577
              + + +  +AP  +     +E +VTG+K VD L P
Sbjct: 150 ANARRSRVEVKAPGIIPRLSVREPMVTGVKAVDSLVP 186


>U41015-2|AAA82311.1|  491|Caenorhabditis elegans Vacuolar h atpase
           protein 12 protein.
          Length = 491

 Score = 44.4 bits (100), Expect = 8e-05
 Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
 Frame = +2

Query: 299 LGENTVRTIAMDGTEGLVRGQPVLD-SGSPIRIPVGAETLGRIINVIGEPIDERGPIPTD 475
           + +N       +GT G+     + + +G  +R PV  + LGRI N  G+PID+  P+  +
Sbjct: 71  ISKNKAVVQVFEGTSGIDAKNTICEFTGDILRTPVSEDMLGRIFNGSGKPIDKGPPVLAE 130

Query: 476 KTAAIHAEAPEFVDMSVQQEILVTGIKVVDLL 571
               I+ +          +E++ TGI  +D++
Sbjct: 131 DFLDINGQPINPWSRIYPEEMIQTGISAIDVM 162


>AL023815-3|CAD92384.1|  503|Caenorhabditis elegans Hypothetical
           protein H28O16.1c protein.
          Length = 503

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 19/49 (38%), Positives = 29/49 (59%)
 Frame = +2

Query: 431 VIGEPIDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAP 577
           V+G PID +GPI   + + +  +AP  +     +E +VTG+K VD L P
Sbjct: 103 VLGNPIDGKGPIANARRSRVEVKAPGIIPRLSVREPMVTGVKAVDSLVP 151


>AC006708-2|AAF60418.1|  501|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 300 protein.
          Length = 501

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 20/66 (30%), Positives = 35/66 (53%)
 Frame = +2

Query: 374 SGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGI 553
           +G   R PV  + LGRI N  G+PID+  P+  +    I+ +     +    +E++ TGI
Sbjct: 109 TGDIFRSPVSLDMLGRIFNGSGKPIDKGPPVLPEDYLDINGQPINPFNRIYPEEMIQTGI 168

Query: 554 KVVDLL 571
             +D++
Sbjct: 169 SAIDVM 174


>AL033512-1|CAA22076.1|  606|Caenorhabditis elegans Hypothetical
           protein Y49A3A.2 protein.
          Length = 606

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +2

Query: 338 TEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDE 454
           T G+  G PVL +G P+ + +G   +G I + I  P+ +
Sbjct: 59  TSGVTIGDPVLRTGKPLSVELGPGIMGSIFDGIQRPLKD 97


>U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical
           protein C12D12.1a protein.
          Length = 769

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
 Frame = -3

Query: 558 TFIPVTRISCCTDMSTNSGASA*IAAVLSVGMGPRS-SIGSPITL-MMRPRV---SAPTG 394
           TF PVT +S  +  +T +  +       +    P + +  +P T+  M P     + P  
Sbjct: 468 TFYPVTTVSTMSPPTTVTVPTTPTPVPTTTNTPPANPTTATPTTVGTMTPSTGTTTVPVP 527

Query: 393 IRIGEPESSTGCPRTKPSVPS 331
              G P + T  P TKP+VPS
Sbjct: 528 TTTGSPTTQTTAPVTKPTVPS 548


>U42830-4|AAC48277.1|  487|Caenorhabditis elegans Neuronal igcam
           protein 3 protein.
          Length = 487

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
 Frame = +2

Query: 332 DGTEGLVRGQPV-LDSGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPE 508
           D  +G + G+P+ +D G  ++ P G E + ++ N  GEP+DE         A I +   E
Sbjct: 152 DTVKGALLGEPITIDCG--VKGPSGKEPMIQMTNGNGEPLDEEIWTIAGNEATIDSLKKE 209

Query: 509 FVDMSV 526
             +++V
Sbjct: 210 HAELTV 215


>Z70684-5|CAA94600.1|  233|Caenorhabditis elegans Hypothetical
           protein F28D1.5 protein.
          Length = 233

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 619 CGQNCIDYGTDQQCCQSPW 675
           C   C+ Y TDQ+CC+  +
Sbjct: 168 CKSGCLGYNTDQECCRGAY 186


>Z70684-3|CAA94598.1|  233|Caenorhabditis elegans Hypothetical
           protein F28D1.3 protein.
          Length = 233

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 619 CGQNCIDYGTDQQCCQSPW 675
           C   C+ Y TDQ+CC+  +
Sbjct: 168 CKSGCLGYNTDQECCRGAY 186


>AL132898-6|CAC14409.1|  187|Caenorhabditis elegans Hypothetical
           protein Y59A8B.9 protein.
          Length = 187

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 19/73 (26%), Positives = 27/73 (36%)
 Frame = -3

Query: 519 MSTNSGASA*IAAVLSVGMGPRSSIGSPITLMMRPRVSAPTGIRIGEPESSTGCPRTKPS 340
           + T  G +A  +A     M  RS    P+T M  P  +         P  S+  PR    
Sbjct: 9   LPTEGGPAAGASAKTPSRMPARSVPQKPVTTMRTPAATPAAPPTRPTPSRSSAAPRATAP 68

Query: 339 VPSMAMVRTVFSP 301
            P+ A  +T   P
Sbjct: 69  TPTAAPPKTCAPP 81


>AL132898-5|CAC14408.1|  316|Caenorhabditis elegans Hypothetical
           protein Y59A8B.7 protein.
          Length = 316

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 19/73 (26%), Positives = 27/73 (36%)
 Frame = -3

Query: 519 MSTNSGASA*IAAVLSVGMGPRSSIGSPITLMMRPRVSAPTGIRIGEPESSTGCPRTKPS 340
           + T  G +A  +A     M  RS    P+T M  P  +         P  S+  PR    
Sbjct: 138 LPTEGGPAAGASAKTPSRMPARSVPQKPVTTMRTPAATPAAPPTRPTPSRSSAAPRATAP 197

Query: 339 VPSMAMVRTVFSP 301
            P+ A  +T   P
Sbjct: 198 TPTAAPPKTCAPP 210


>Z78418-3|CAB01697.1|  932|Caenorhabditis elegans Hypothetical
           protein F25D7.4 protein.
          Length = 932

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -3

Query: 447 IGSPITLMMRPRVSAPTGIRIGEPESSTGCPRTKPSVPSMAMVRTVFS 304
           +G P   + RP    P+        S+TG  RT+P+VP+++  R + S
Sbjct: 284 LGIPAPAVPRPVAGKPST----RSASTTGAARTRPAVPAVSAPRALTS 327


>U42831-1|AAA83513.2|  614|Caenorhabditis elegans Hypothetical
           protein R11B5.1 protein.
          Length = 614

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 16/53 (30%)
 Frame = -2

Query: 586 FGIRSEQIDDFYTSYENLL------LHRHVDKL----------WSFSMNSSSL 476
           FG++  Q+ +++ +Y+  L      LH+H+DKL          W+F+M + SL
Sbjct: 433 FGLKQPQMTEYFIAYDRYLEQELPALHQHLDKLDVRPDLYLIEWTFAMYAKSL 485


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,330,341
Number of Sequences: 27780
Number of extensions: 351793
Number of successful extensions: 1004
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)