Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2g18
         (294 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces...   143   6e-36
SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein su...    29   0.19 
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    26   1.0  
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   1.3  
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    25   2.3  
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    25   3.1  
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe...    24   4.0  
SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni...    24   5.3  
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe...    24   5.3  
SPCC1919.07 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    23   7.1  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    23   7.1  
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    23   9.3  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    23   9.3  

>SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 118

 Score =  143 bits (346), Expect = 6e-36
 Identities = 66/81 (81%), Positives = 77/81 (95%)
 Frame = +1

Query: 1   ADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSE 180
           +DL+N AK ++LRVKGPVR+PTKIL+ITTRKTP GEGSKTW+ ++MRIHKR+IDLHSPSE
Sbjct: 37  SDLVNRAKDKQLRVKGPVRLPTKILKITTRKTPNGEGSKTWETYEMRIHKRLIDLHSPSE 96

Query: 181 IVKQITSINIEPGVEVEVTIA 243
           IVKQITSI+IEPGVEVEVTIA
Sbjct: 97  IVKQITSIHIEPGVEVEVTIA 117


>SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein
           subunit S10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 224

 Score = 28.7 bits (61), Expect = 0.19
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = +1

Query: 31  KLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEI 183
           K+ +KGP  +P K+   T  ++P    S + + F+   H R+I L+S + +
Sbjct: 92  KIPIKGPRPLPNKVESWTLLRSPFIHKS-SQENFERITHSRLIQLYSVNPV 141


>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 997

 Score = 26.2 bits (55), Expect = 1.0
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
 Frame = +1

Query: 31  KLRVKGPVRMPTKI---LRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITS 201
           K R  G +  P  +   LR    KT  G G    +    ++  R+ DLH   E   +I +
Sbjct: 785 KSRENGTIPRPLYVISHLRPLLHKTSLGVGDILLE-VNGKMITRLSDLHE-FETESEIKA 842

Query: 202 INIEPGVEVEVTI 240
           + +  G+E+E+TI
Sbjct: 843 VILRDGIEMEITI 855


>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 841

 Score = 25.8 bits (54), Expect = 1.3
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +1

Query: 136 MRIHKRVIDLHSPSEIVKQITSINIEPGV 222
           +R+H+R I L + S+ ++   + NIE G+
Sbjct: 406 LRVHERAIKLRTLSDSIRADVAENIEMGI 434


>SPAC23C4.19 |spt5||transcription elongation factor
            Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 25.0 bits (52), Expect = 2.3
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 42   KGPSPHANQDPAYHHP*NSLW*RFKDLGSFSDANPQESD 158
            K P+ +ANQ P   +  N+ W +    G FS+ N    D
Sbjct: 916  KTPAWNANQTPMVANGTNTSWGQTPAYGGFSETNWDTED 954


>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 88  RKTPCGEGSKTWDRFQM 138
           R +P   GSKTW+ FQ+
Sbjct: 427 RMSPLRSGSKTWNIFQL 443


>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 871

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 157 IDLHSPSEIVKQITSINIEPGVEVEVT 237
           ID  SPS I  ++ S N+E G    VT
Sbjct: 545 IDGESPSSISSRLPSSNLEQGSSSSVT 571


>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
           Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 737

 Score = 23.8 bits (49), Expect = 5.3
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 167 CRSITLLWIRI*KRSQVFEPSPQ 99
           C +  L W+   KRSQ   PSP+
Sbjct: 331 CLNFALAWMFEFKRSQYSNPSPE 353


>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 652

 Score = 23.8 bits (49), Expect = 5.3
 Identities = 11/43 (25%), Positives = 24/43 (55%)
 Frame = +1

Query: 85  TRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIE 213
           T++ PC   S+  +   + + +R++D +   +   Q+TS+ IE
Sbjct: 150 TKRLPCSCLSEIKNIDDLGLKQRILDSYKKQKPSGQLTSMQIE 192


>SPCC1919.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 206

 Score = 23.4 bits (48), Expect = 7.1
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 93  NSLW*RFKDLGSFSDANPQESDRPTL 170
           N+ W RFK+ G + D +  E + P+L
Sbjct: 35  NNEW-RFKNAGEYFDEDNNEEEYPSL 59


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 23.4 bits (48), Expect = 7.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 114 KDLGSFSDANPQESDRPTLSL*NCET 191
           KDL  ++ ANP    RP + L  C++
Sbjct: 570 KDLVKYNPANPIPVPRPRVDLTQCKS 595


>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 5/37 (13%)
 Frame = -1

Query: 96  SFTGGDTQ-----DLGWHADWALYTQLLFLGSID*VS 1
           +F GGD +     + G H  W LY   L L +   VS
Sbjct: 670 AFLGGDMEYDVQNETGLHRPWCLYVSTLILWAYGYVS 706


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
           Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 15/52 (28%), Positives = 22/52 (42%)
 Frame = -3

Query: 178 QRESVGRSLSCGFASENDPRSLNLHHKEFYGW*YAGSWLACGLGPLHAASVS 23
           +R SV  + SC  +  N P S+   + +   W          LG LH +S S
Sbjct: 626 KRNSVLSNKSCASSESNTPASVKQDYDDIQSWTIIEE--IQSLGVLHLSSPS 675


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,199,115
Number of Sequences: 5004
Number of extensions: 21698
Number of successful extensions: 60
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 71828050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)