Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc2g18
(294 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_02_0040 + 4482853-4482988,4483111-4483224,4485372-4485514 138 5e-34
03_02_0370 + 7853646-7853772,7854508-7854621,7855152-7855294 138 5e-34
06_01_0239 - 1819316-1819458,1820578-1820691,1820794-1820923 138 7e-34
03_02_0020 - 5045900-5046211,5046233-5046290,5046604-5047242,504... 40 3e-04
03_06_0677 + 35476009-35476014,35476974-35477474,35477574-354777... 27 3.5
06_03_1366 + 29601921-29602646 26 4.6
10_08_0514 + 18465474-18465760,18465888-18465978,18466670-184667... 25 8.0
07_01_0814 - 6464072-6464544,6464770-6465208 25 8.0
03_03_0225 - 15587557-15588774 25 8.0
03_02_0407 - 8187956-8188099,8188203-8188371,8188456-8188625,818... 25 8.0
>10_02_0040 + 4482853-4482988,4483111-4483224,4485372-4485514
Length = 130
Score = 138 bits (335), Expect = 5e-34
Identities = 63/82 (76%), Positives = 73/82 (89%)
Frame = +1
Query: 1 ADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSE 180
ADL+ GAK ++LRVKGPVR+PTK+L ITTRK+PCGEG+ TWDRF+ RIHKRVIDL S +
Sbjct: 48 ADLVKGAKDKQLRVKGPVRIPTKVLHITTRKSPCGEGTNTWDRFEFRIHKRVIDLISSPD 107
Query: 181 IVKQITSINIEPGVEVEVTIAD 246
+VKQITSI IEPGVEVEVTIAD
Sbjct: 108 VVKQITSITIEPGVEVEVTIAD 129
>03_02_0370 + 7853646-7853772,7854508-7854621,7855152-7855294
Length = 127
Score = 138 bits (335), Expect = 5e-34
Identities = 63/82 (76%), Positives = 73/82 (89%)
Frame = +1
Query: 1 ADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSE 180
ADL+ GAK ++LRVKGPVR+PTK+L ITTRK+PCGEG+ TWDRF+ RIHKRVIDL S +
Sbjct: 45 ADLVKGAKDKQLRVKGPVRIPTKVLHITTRKSPCGEGTNTWDRFEFRIHKRVIDLISSPD 104
Query: 181 IVKQITSINIEPGVEVEVTIAD 246
+VKQITSI IEPGVEVEVTIAD
Sbjct: 105 VVKQITSITIEPGVEVEVTIAD 126
>06_01_0239 - 1819316-1819458,1820578-1820691,1820794-1820923
Length = 128
Score = 138 bits (334), Expect = 7e-34
Identities = 61/81 (75%), Positives = 73/81 (90%)
Frame = +1
Query: 4 DLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEI 183
DL+ GAK + L+VKGPVRMPTK+L ITTRK+PCGEG+ TWDRF+MR+HKRVIDL S +++
Sbjct: 47 DLVKGAKDKSLKVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFEMRVHKRVIDLVSSADV 106
Query: 184 VKQITSINIEPGVEVEVTIAD 246
VKQITSI IEPGVEVEVTI+D
Sbjct: 107 VKQITSITIEPGVEVEVTISD 127
>03_02_0020 -
5045900-5046211,5046233-5046290,5046604-5047242,
5048475-5048515,5048672-5048728,5048952-5049140
Length = 431
Score = 39.9 bits (89), Expect = 3e-04
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Frame = +1
Query: 7 LINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSP-SEI 183
+I AK + GPV +PTK +P + F++R H+R+ID+ P ++
Sbjct: 354 IIEAAKTTNAKTMGPVPLPTKRRVYCVLNSPHVHKDSRF-HFEIRTHQRLIDIMYPTAQT 412
Query: 184 VKQITSINIEPGVEVEVTI 240
+ + + + GV+VEV +
Sbjct: 413 IDSLMQLQLPAGVDVEVKL 431
>03_06_0677 +
35476009-35476014,35476974-35477474,35477574-35477762,
35477925-35477945
Length = 238
Score = 26.6 bits (56), Expect = 3.5
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = +3
Query: 6 PNQWSQETEAACKGPSPHANQDPAYHHP 89
PN +TEA K HA DPA P
Sbjct: 41 PNNHHGDTEALSKASPLHAGSDPAMRKP 68
>06_03_1366 + 29601921-29602646
Length = 241
Score = 26.2 bits (55), Expect = 4.6
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -2
Query: 269 FIGGSAYASAMVTSTSTPGSMLIEVICFTISEGEC 165
F+G ASA+ + + PG+ + + +S+GEC
Sbjct: 21 FLGSRLPASALASWGTAPGTKTLLNLFLELSQGEC 55
>10_08_0514 +
18465474-18465760,18465888-18465978,18466670-18466767,
18466852-18466949,18468192-18468321,18468410-18468597,
18470291-18470323,18470627-18471000,18471116-18471294,
18471421-18471532,18471655-18471771,18471875-18472189,
18472405-18472743
Length = 786
Score = 25.4 bits (53), Expect = 8.0
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +1
Query: 109 GSKTWDRFQMRIHKRVIDLHSPS 177
G ++W R RIH RV H P+
Sbjct: 298 GLESWSRLVKRIHVRVPPCHRPA 320
>07_01_0814 - 6464072-6464544,6464770-6465208
Length = 303
Score = 25.4 bits (53), Expect = 8.0
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 22 KKQKLRVKGPVRMPTKILRITTRKTPC 102
+K+ +KG PT LR+T RK C
Sbjct: 217 QKELAELKGETPPPTPKLRLTARKRTC 243
>03_03_0225 - 15587557-15588774
Length = 405
Score = 25.4 bits (53), Expect = 8.0
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -3
Query: 190 VSQFQRESVGRSLSC 146
V Q+QRE VGR+L C
Sbjct: 179 VHQYQRELVGRALKC 193
>03_02_0407 -
8187956-8188099,8188203-8188371,8188456-8188625,
8188737-8188915,8189014-8189079,8189171-8189344,
8189593-8189891,8190136-8190236,8190328-8190412,
8190527-8190680,8190781-8190986,8192403-8192647
Length = 663
Score = 25.4 bits (53), Expect = 8.0
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = +3
Query: 18 SQETEAACKG-PSPHANQDPAYHHP 89
+++ EAA KG PSPH Q +HHP
Sbjct: 102 ARKGEAAAKGAPSPHP-QPVHHHHP 125
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,215,066
Number of Sequences: 37544
Number of extensions: 158987
Number of successful extensions: 426
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 328462236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -