Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc2g18
(294 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L06498-1|AAA60286.1| 119|Homo sapiens ribosomal protein S20 pro... 160 6e-40
BC087850-1|AAH87850.1| 119|Homo sapiens ribosomal protein S20 p... 160 6e-40
BC007507-1|AAH07507.1| 119|Homo sapiens ribosomal protein S20 p... 160 6e-40
AB061842-1|BAB79480.1| 119|Homo sapiens ribosomal protein S20 p... 160 6e-40
AB007156-1|BAA25820.1| 60|Homo sapiens ribosomal protein S20 p... 126 2e-29
M16276-1|AAA59823.1| 269|Homo sapiens HLA-DRB2 protein. 29 3.6
AY663414-1|AAU88032.1| 261|Homo sapiens MHC class II antigen pr... 29 3.6
AY375869-1|AAQ88043.1| 234|Homo sapiens MHC class II antigen pr... 29 3.6
AY375868-1|AAQ88042.1| 234|Homo sapiens MHC class II antigen pr... 29 3.6
AF000447-1|AAB86436.1| 255|Homo sapiens MHC class II HLA-DQB1 p... 29 3.6
AY211919-1|AAO65172.1| 253|Homo sapiens sarcoma antigen NY-SAR-... 28 6.2
BC151209-1|AAI51210.1| 1493|Homo sapiens TUBGCP6 protein protein. 27 8.2
BC023573-1|AAH23573.1| 1009|Homo sapiens TUBGCP6 protein protein. 27 8.2
AY950604-1|AAX22134.1| 36|Homo sapiens MHC class II antigen pr... 27 8.2
AY375860-1|AAQ88034.1| 220|Homo sapiens MHC class II antigen pr... 27 8.2
AL022328-10|CAI42756.1| 1819|Homo sapiens tubulin, gamma complex... 27 8.2
AF307155-1|AAK17122.1| 32|Homo sapiens MHC class II HLA-DQ-bet... 27 8.2
AF272887-1|AAK82968.1| 1819|Homo sapiens gamma-tubulin complex c... 27 8.2
AB051456-1|BAB33339.1| 1405|Homo sapiens KIAA1669 protein protein. 27 8.2
>L06498-1|AAA60286.1| 119|Homo sapiens ribosomal protein S20
protein.
Length = 119
Score = 160 bits (389), Expect = 6e-40
Identities = 75/83 (90%), Positives = 80/83 (96%)
Frame = +1
Query: 1 ADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSE 180
ADLI GAK++ L+VKGPVRMPTK LRITTRKTPCGEGSKTWDRFQMRIHKR+IDLHSPSE
Sbjct: 37 ADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSE 96
Query: 181 IVKQITSINIEPGVEVEVTIADA 249
IVKQITSI+IEPGVEVEVTIADA
Sbjct: 97 IVKQITSISIEPGVEVEVTIADA 119
>BC087850-1|AAH87850.1| 119|Homo sapiens ribosomal protein S20
protein.
Length = 119
Score = 160 bits (389), Expect = 6e-40
Identities = 75/83 (90%), Positives = 80/83 (96%)
Frame = +1
Query: 1 ADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSE 180
ADLI GAK++ L+VKGPVRMPTK LRITTRKTPCGEGSKTWDRFQMRIHKR+IDLHSPSE
Sbjct: 37 ADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSE 96
Query: 181 IVKQITSINIEPGVEVEVTIADA 249
IVKQITSI+IEPGVEVEVTIADA
Sbjct: 97 IVKQITSISIEPGVEVEVTIADA 119
>BC007507-1|AAH07507.1| 119|Homo sapiens ribosomal protein S20
protein.
Length = 119
Score = 160 bits (389), Expect = 6e-40
Identities = 75/83 (90%), Positives = 80/83 (96%)
Frame = +1
Query: 1 ADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSE 180
ADLI GAK++ L+VKGPVRMPTK LRITTRKTPCGEGSKTWDRFQMRIHKR+IDLHSPSE
Sbjct: 37 ADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSE 96
Query: 181 IVKQITSINIEPGVEVEVTIADA 249
IVKQITSI+IEPGVEVEVTIADA
Sbjct: 97 IVKQITSISIEPGVEVEVTIADA 119
>AB061842-1|BAB79480.1| 119|Homo sapiens ribosomal protein S20
protein.
Length = 119
Score = 160 bits (389), Expect = 6e-40
Identities = 75/83 (90%), Positives = 80/83 (96%)
Frame = +1
Query: 1 ADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSE 180
ADLI GAK++ L+VKGPVRMPTK LRITTRKTPCGEGSKTWDRFQMRIHKR+IDLHSPSE
Sbjct: 37 ADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSE 96
Query: 181 IVKQITSINIEPGVEVEVTIADA 249
IVKQITSI+IEPGVEVEVTIADA
Sbjct: 97 IVKQITSISIEPGVEVEVTIADA 119
>AB007156-1|BAA25820.1| 60|Homo sapiens ribosomal protein S20
protein.
Length = 60
Score = 126 bits (303), Expect = 2e-29
Identities = 57/60 (95%), Positives = 59/60 (98%)
Frame = +1
Query: 43 KGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGV 222
KGPVRMPTK LRITTRKTPCGEGSKTWDRFQMRIHKR+IDLHSPSEIVKQITSI+IEPGV
Sbjct: 1 KGPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGV 60
>M16276-1|AAA59823.1| 269|Homo sapiens HLA-DRB2 protein.
Length = 269
Score = 28.7 bits (61), Expect = 3.6
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +1
Query: 25 KQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQIT 198
K+ LR+ G +R PT L + TP EG + F ++ K + + +E V+ +T
Sbjct: 4 KKALRIPGGLRAPTVTLMLAMLSTPVAEGRDPPEDFVLQF-KAMCYFTNGTERVRYVT 60
>AY663414-1|AAU88032.1| 261|Homo sapiens MHC class II antigen
protein.
Length = 261
Score = 28.7 bits (61), Expect = 3.6
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +1
Query: 25 KQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQIT 198
K+ LR+ G +R PT L + TP EG + F ++ K + + +E V+ +T
Sbjct: 4 KKALRIPGGLRAPTVTLMLAMLSTPVAEGRDPPEDFVLQF-KAMCYFTNGTERVRYVT 60
>AY375869-1|AAQ88043.1| 234|Homo sapiens MHC class II antigen
protein.
Length = 234
Score = 28.7 bits (61), Expect = 3.6
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +1
Query: 25 KQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQIT 198
K+ LR+ G +R PT L + TP EG + F ++ K + + +E V+ +T
Sbjct: 4 KKALRIPGGLRAPTVTLMLAMLSTPVAEGRDPPEDFVLQF-KAMCYFTNGTERVRYVT 60
>AY375868-1|AAQ88042.1| 234|Homo sapiens MHC class II antigen
protein.
Length = 234
Score = 28.7 bits (61), Expect = 3.6
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +1
Query: 25 KQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQIT 198
K+ LR+ G +R PT L + TP EG + F ++ K + + +E V+ +T
Sbjct: 4 KKALRIPGGLRAPTVTLMLAMLSTPVAEGRDPPEDFVLQF-KAMCYFTNGTERVRYVT 60
>AF000447-1|AAB86436.1| 255|Homo sapiens MHC class II HLA-DQB1
protein.
Length = 255
Score = 28.7 bits (61), Expect = 3.6
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +1
Query: 25 KQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQIT 198
K+ LR+ G +R PT L + TP EG + F ++ K + + +E V+ +T
Sbjct: 1 KKALRIPGGLRAPTVTLMLAMLSTPVAEGRDPPEDFVLQF-KAMCYFTNGTERVRYVT 57
>AY211919-1|AAO65172.1| 253|Homo sapiens sarcoma antigen NY-SAR-48
protein.
Length = 253
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Frame = +1
Query: 13 NGAKKQKLRVKGPVRMPTKILRI---TTRKTPCGEGSKT 120
+ AKK+ RV+G + ++ L+ TT+K P G+GS+T
Sbjct: 24 SSAKKKDKRVQGGRVIESRYLQYEKKTTQKAPAGDGSQT 62
>BC151209-1|AAI51210.1| 1493|Homo sapiens TUBGCP6 protein protein.
Length = 1493
Score = 27.5 bits (58), Expect = 8.2
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = -3
Query: 280 FKNILLAALPTRRRWSPQPLHRARC*LR*SVSQFQRESVGRSLSCGFAS 134
F +L A+ T +P PL A C L S Q +S G+ +CG AS
Sbjct: 953 FSTVLRPAVATSP--APGPLQAAECSLGSSGLQLWEDSCGKMDACGSAS 999
>BC023573-1|AAH23573.1| 1009|Homo sapiens TUBGCP6 protein protein.
Length = 1009
Score = 27.5 bits (58), Expect = 8.2
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = -3
Query: 280 FKNILLAALPTRRRWSPQPLHRARC*LR*SVSQFQRESVGRSLSCGFAS 134
F +L A+ T +P PL A C L S Q +S G+ +CG AS
Sbjct: 143 FSTVLRPAVATSP--APGPLQAAECSLGSSGLQLWEDSCGKMDACGSAS 189
>AY950604-1|AAX22134.1| 36|Homo sapiens MHC class II antigen
protein.
Length = 36
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 25 KQKLRVKGPVRMPTKILRITTRKTPCGEG 111
K+ LR+ G +R PT L + TP EG
Sbjct: 4 KKALRIPGGLRAPTVTLMLAMLSTPVAEG 32
>AY375860-1|AAQ88034.1| 220|Homo sapiens MHC class II antigen
protein.
Length = 220
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/58 (27%), Positives = 30/58 (51%)
Frame = +1
Query: 25 KQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQIT 198
K+ LR+ G +R+ T L + TP EG + + F + K + + +E+V+ +T
Sbjct: 4 KKALRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVFQF-KGMCYFTNGTELVRGVT 60
>AL022328-10|CAI42756.1| 1819|Homo sapiens tubulin, gamma complex
associated protein 6 protein.
Length = 1819
Score = 27.5 bits (58), Expect = 8.2
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = -3
Query: 280 FKNILLAALPTRRRWSPQPLHRARC*LR*SVSQFQRESVGRSLSCGFAS 134
F +L A+ T +P PL A C L S Q +S G+ +CG AS
Sbjct: 953 FSTVLRPAVATSP--APGPLQAAECSLGSSGLQLWEDSCGKMDACGSAS 999
>AF307155-1|AAK17122.1| 32|Homo sapiens MHC class II HLA-DQ-beta
protein.
Length = 32
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 25 KQKLRVKGPVRMPTKILRITTRKTPCGEG 111
K+ LR+ G +R PT L + TP EG
Sbjct: 4 KKALRIPGGLRAPTVTLMLAMLSTPVAEG 32
>AF272887-1|AAK82968.1| 1819|Homo sapiens gamma-tubulin complex
component protein.
Length = 1819
Score = 27.5 bits (58), Expect = 8.2
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = -3
Query: 280 FKNILLAALPTRRRWSPQPLHRARC*LR*SVSQFQRESVGRSLSCGFAS 134
F +L A+ T +P PL A C L S Q +S G+ +CG AS
Sbjct: 953 FSTVLRPAVATSP--APGPLQAAECSLGSSGLQLWEDSCGKMDACGSAS 999
>AB051456-1|BAB33339.1| 1405|Homo sapiens KIAA1669 protein protein.
Length = 1405
Score = 27.5 bits (58), Expect = 8.2
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = -3
Query: 280 FKNILLAALPTRRRWSPQPLHRARC*LR*SVSQFQRESVGRSLSCGFAS 134
F +L A+ T +P PL A C L S Q +S G+ +CG AS
Sbjct: 921 FSTVLRPAVATSP--APGPLQAAECSLGSSGLQLWEDSCGKMDACGSAS 967
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,579,617
Number of Sequences: 237096
Number of extensions: 914344
Number of successful extensions: 5394
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 5343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5389
length of database: 76,859,062
effective HSP length: 74
effective length of database: 59,313,958
effective search space used: 1364221034
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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