Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2g18
         (294 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132876-13|CAD21665.1|  117|Caenorhabditis elegans Hypothetical...   144   1e-35
Z82272-6|CAB05222.1| 1431|Caenorhabditis elegans Hypothetical pr...    30   0.25 
U97001-4|AAM45354.1|   86|Caenorhabditis elegans Hypothetical pr...    27   3.1  
U97001-3|AAB52258.2|  449|Caenorhabditis elegans Hypothetical pr...    27   3.1  
Z36719-3|CAA85314.1|  135|Caenorhabditis elegans Hypothetical pr...    26   4.1  
U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical pr...    26   4.1  
Z93374-8|CAB07555.1|  359|Caenorhabditis elegans Hypothetical pr...    26   5.4  
Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical pr...    26   5.4  
Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical p...    26   5.4  
U40029-1|AAA81123.3|  360|Caenorhabditis elegans Serpentine rece...    26   5.4  
AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator comp...    26   5.4  
Z68319-1|CAA92699.1|  598|Caenorhabditis elegans Hypothetical pr...    25   7.1  
U41021-7|AAL02487.1|  680|Caenorhabditis elegans Hypothetical pr...    25   7.1  
U41021-6|AAL02488.1|  713|Caenorhabditis elegans Hypothetical pr...    25   7.1  
AY028165-1|AAK19021.1|  598|Caenorhabditis elegans DPL-1 protein.      25   7.1  
Z78543-2|CAB01752.1|  369|Caenorhabditis elegans Hypothetical pr...    25   9.4  
Z78420-2|CAB01710.3|  738|Caenorhabditis elegans Hypothetical pr...    25   9.4  
L07144-10|AAK21437.1| 1327|Caenorhabditis elegans Hypothetical p...    25   9.4  

>AL132876-13|CAD21665.1|  117|Caenorhabditis elegans Hypothetical
           protein Y105E8A.16 protein.
          Length = 117

 Score =  144 bits (348), Expect = 1e-35
 Identities = 63/82 (76%), Positives = 77/82 (93%)
 Frame = +1

Query: 1   ADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSE 180
           A LI+GAK + L VKGP+RMPTK+LRITTRKTPCGEGSKTWDRFQMRIHKR+I+LH+P+E
Sbjct: 36  AQLIDGAKNEHLIVKGPIRMPTKVLRITTRKTPCGEGSKTWDRFQMRIHKRLINLHAPAE 95

Query: 181 IVKQITSINIEPGVEVEVTIAD 246
           +++QITSI+IEPGV++EVT AD
Sbjct: 96  VLRQITSISIEPGVDIEVTRAD 117


>Z82272-6|CAB05222.1| 1431|Caenorhabditis elegans Hypothetical protein
            F55G11.9 protein.
          Length = 1431

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -2

Query: 290  FFIFQKYFIGGSAYASAMVTSTSTPGSMLIEVICFT 183
            F+ F  YF+    Y +A + +T T GS+L+ V C T
Sbjct: 955  FYSFLLYFVS-LVYLTASLINTPTKGSLLLYVFCLT 989


>U97001-4|AAM45354.1|   86|Caenorhabditis elegans Hypothetical
           protein K08B12.2b protein.
          Length = 86

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 181 FQRESVGRSLSCGFASENDPRSLNLHHKEFYG 86
           FQRE +   L+CG AS +  R+L     E +G
Sbjct: 37  FQREQLNGGLTCGGASRSSNRTLFCRKCEGHG 68


>U97001-3|AAB52258.2|  449|Caenorhabditis elegans Hypothetical
           protein K08B12.2a protein.
          Length = 449

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 181 FQRESVGRSLSCGFASENDPRSLNLHHKEFYG 86
           FQRE +   L+CG AS +  R+L     E +G
Sbjct: 37  FQREQLNGGLTCGGASRSSNRTLFCRKCEGHG 68


>Z36719-3|CAA85314.1|  135|Caenorhabditis elegans Hypothetical
           protein C06C3.7 protein.
          Length = 135

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
 Frame = +1

Query: 10  INGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWD-RFQMRIHKRVIDLHSPSEIV 186
           I+G K+   R+K    M  K ++I   +TP  E  K    R + RI KR  ++H  +   
Sbjct: 50  IDGQKENPKRIKMSQHMTAKEVKIPLLRTPDEEARKIEKLRREARI-KRSKEVHYDAAEQ 108

Query: 187 KQITSINIEPGVEVE 231
           +QI  +N E  V++E
Sbjct: 109 QQI-MMNYEWTVQME 122


>U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical
           protein H03E18.1 protein.
          Length = 1147

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +1

Query: 1   ADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGE 108
           A  + G KK+  + K   + PTK    +T++ P  E
Sbjct: 364 AKTVEGEKKETKKPKSTTKKPTKTAAASTKRPPTTE 399


>Z93374-8|CAB07555.1|  359|Caenorhabditis elegans Hypothetical
           protein C06C6.5a protein.
          Length = 359

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -2

Query: 248 ASAMVTSTSTPGSMLIEVICFTISEGECRSITL 150
           + A+ +S+STP S+ I  +   I   +C SITL
Sbjct: 88  SEALTSSSSTPPSLPISQLPSRIIPRDCSSITL 120


>Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical protein
            K08F8.6 protein.
          Length = 2862

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 13/59 (22%), Positives = 30/59 (50%)
 Frame = +1

Query: 28   QKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSI 204
            QK  VK  ++   + L++TT+K    +G+K      +   K+ +D     + +K++ ++
Sbjct: 855  QKQIVKRSLKRAIRKLKLTTKKDSQSKGTKQQKLVLLSYKKKKVDEKKFQQYLKEVENV 913


>Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical
            protein K08F8.6 protein.
          Length = 2862

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 13/59 (22%), Positives = 30/59 (50%)
 Frame = +1

Query: 28   QKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSI 204
            QK  VK  ++   + L++TT+K    +G+K      +   K+ +D     + +K++ ++
Sbjct: 855  QKQIVKRSLKRAIRKLKLTTKKDSQSKGTKQQKLVLLSYKKKKVDEKKFQQYLKEVENV 913


>U40029-1|AAA81123.3|  360|Caenorhabditis elegans Serpentine
           receptor, class e (epsilon)protein 39 protein.
          Length = 360

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -3

Query: 157 SLSCGFASENDPRSLNLHHKEFYGW*YAGSWLACGLGPLHAASVSWL 17
           SL+  F ++ + RSL L  K      +A   + CG+G L  A++ W+
Sbjct: 235 SLAIRFQAKENARSLQLAKKVVL---FAAFAILCGMGLLILAAMHWI 278


>AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator complex
            subunit Med13 protein.
          Length = 2862

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 13/59 (22%), Positives = 30/59 (50%)
 Frame = +1

Query: 28   QKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSI 204
            QK  VK  ++   + L++TT+K    +G+K      +   K+ +D     + +K++ ++
Sbjct: 855  QKQIVKRSLKRAIRKLKLTTKKDSQSKGTKQQKLVLLSYKKKKVDEKKFQQYLKEVENV 913


>Z68319-1|CAA92699.1|  598|Caenorhabditis elegans Hypothetical
           protein T23G7.1 protein.
          Length = 598

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 54  PHANQDPAYHHP*NSLW*RFKDLGSFSDANPQESDRPT 167
           P + QD +++ P    W     +G  S A  Q+SD+PT
Sbjct: 36  PRSYQDESHNEPVG--WDEPSGVGGSSGAGGQQSDKPT 71


>U41021-7|AAL02487.1|  680|Caenorhabditis elegans Hypothetical
           protein F14D12.1a protein.
          Length = 680

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = +1

Query: 28  QKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSE 180
           Q  R    VR+PT+IL   +  +  G   K+   F+ ++  +      PS+
Sbjct: 611 QTTRTTSSVRLPTRILVNQSSTSSEGSSGKSQHYFESKVGPKTSSTSHPSD 661


>U41021-6|AAL02488.1|  713|Caenorhabditis elegans Hypothetical
           protein F14D12.1b protein.
          Length = 713

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = +1

Query: 28  QKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSE 180
           Q  R    VR+PT+IL   +  +  G   K+   F+ ++  +      PS+
Sbjct: 611 QTTRTTSSVRLPTRILVNQSSTSSEGSSGKSQHYFESKVGPKTSSTSHPSD 661


>AY028165-1|AAK19021.1|  598|Caenorhabditis elegans DPL-1 protein.
          Length = 598

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 54  PHANQDPAYHHP*NSLW*RFKDLGSFSDANPQESDRPT 167
           P + QD +++ P    W     +G  S A  Q+SD+PT
Sbjct: 36  PRSYQDESHNEPVG--WDEPSGVGGSSGAGGQQSDKPT 71


>Z78543-2|CAB01752.1|  369|Caenorhabditis elegans Hypothetical
           protein F29G6.2 protein.
          Length = 369

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -3

Query: 199 R*SVSQFQRESVGRSLSCGFASENDPRS-LNLHHK 98
           R +++QF+ E +G  +   F++END  S L  H K
Sbjct: 122 RQTIAQFEVEKMGGPVRNSFSTENDEVSKLEAHEK 156


>Z78420-2|CAB01710.3|  738|Caenorhabditis elegans Hypothetical
           protein F45H11.3 protein.
          Length = 738

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/45 (24%), Positives = 21/45 (46%)
 Frame = +1

Query: 76  RITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINI 210
           RI +R  PC   S    R +  + + ++  H P  +++ + S  I
Sbjct: 328 RILSRYAPCDISSDYSPRMEKLLKEELMPAHDPEFLIELVESATI 372


>L07144-10|AAK21437.1| 1327|Caenorhabditis elegans Hypothetical
            protein R05D3.11 protein.
          Length = 1327

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
 Frame = -1

Query: 192  LFHNFRGRV*VDHSLVDSHLKTIPGL*TFTTRSFTGGD--TQDLGWHADWALYTQL 31
            L H+    V V H + D+H   +P +  FT +    GD  T D  +  D    TQL
Sbjct: 1256 LNHSCDPNVHVQHVMYDTHDLRLPWVAFFTRKYVKAGDELTWDYQYTQDQTATTQL 1311


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,754,818
Number of Sequences: 27780
Number of extensions: 126575
Number of successful extensions: 263
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 263
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 291481146
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)