Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2g14
         (699 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067217-1|AAY55828.1|  191|Caenorhabditis elegans Hypothetical ...    28   5.6  
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ...    28   7.4  
Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical pr...    27   9.8  
AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein.      27   9.8  
AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP ...    27   9.8  
AF022973-10|AAC25795.2| 1143|Caenorhabditis elegans Hypothetical...    27   9.8  

>AF067217-1|AAY55828.1|  191|Caenorhabditis elegans Hypothetical
           protein F56A6.5 protein.
          Length = 191

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/30 (36%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = +3

Query: 447 HHPKRCLEADDLPLCSQRRLR-RCPQSCTN 533
           H+P+R  E+D+ P+C+  +L+ +  + CTN
Sbjct: 75  HNPRRAHESDESPICTACQLKSKTLRICTN 104


>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
           protein F21E9.1 protein.
          Length = 1170

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 272 MKRLVINVRDPSLRQSLYNTIAYIERLLNI 361
           M+RL  N  DP   QS YN + Y  R  N+
Sbjct: 140 MERLPDNRHDPHQNQSNYNMLQYFSRKYNL 169


>Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical
           protein C05C12.3 protein.
          Length = 1694

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = +2

Query: 140 DNTVLLNRDVFLNI-LKFANDVFDNKAYMYVDDSEVSRYYNAVVKMKRL 283
           D+TV    +VF N  LK  ND  ++  +++ D+  V+RY   ++  KRL
Sbjct: 323 DSTVTYATNVFNNTRLKELND--NHSYFLFSDNGTVNRYGAEIIMRKRL 369


>AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein.
          Length = 1694

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = +2

Query: 140 DNTVLLNRDVFLNI-LKFANDVFDNKAYMYVDDSEVSRYYNAVVKMKRL 283
           D+TV    +VF N  LK  ND  ++  +++ D+  V+RY   ++  KRL
Sbjct: 323 DSTVTYATNVFNNTRLKELND--NHSYFLFSDNGTVNRYGAEIIMRKRL 369


>AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP
           homologous cationchannel protein.
          Length = 1681

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = +2

Query: 140 DNTVLLNRDVFLNI-LKFANDVFDNKAYMYVDDSEVSRYYNAVVKMKRL 283
           D+TV    +VF N  LK  ND  ++  +++ D+  V+RY   ++  KRL
Sbjct: 310 DSTVTYATNVFNNTRLKELND--NHSYFLFSDNGTVNRYGAEIIMRKRL 356


>AF022973-10|AAC25795.2| 1143|Caenorhabditis elegans Hypothetical
            protein F25G6.2 protein.
          Length = 1143

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/58 (25%), Positives = 28/58 (48%)
 Frame = +2

Query: 245  SRYYNAVVKMKRLVINVRDPSLRQSLYNTIAYIERLLNIGTVNDSEITMLIADFYDLY 418
            + Y  +V  + R +  VRDP     +++ I  I+    I   ND+E  +L+ +   L+
Sbjct: 916  AEYQKSVNVLFRKLYTVRDPQTGNLVFDPIEVIKEYHKIEPKNDNEAELLVNNLEFLF 973


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,827,619
Number of Sequences: 27780
Number of extensions: 211845
Number of successful extensions: 673
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)