Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc2g07
(782 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyc... 205 6e-54
SPBC3H7.04 |||mitochondrial ribosomal protein subunit S26|Schizo... 56 4e-09
SPBC16A3.14 |||mitochondrial ribosomal protein subunit S26|Schiz... 42 8e-05
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc... 32 0.081
SPBC12C2.04 |||NAD binding dehydrogenase family protein|Schizosa... 30 0.43
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||... 29 0.75
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 27 3.0
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c... 26 5.3
SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease ... 26 5.3
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po... 26 7.0
SPCC1795.02c ||SPCC895.01|CaCA proton/calcium exchanger|Schizosa... 26 7.0
SPBC1A4.06c |||mitochondrial matrix protein import protein|Schiz... 26 7.0
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 25 9.3
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 25 9.3
>SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 218
Score = 205 bits (500), Expect = 6e-54
Identities = 100/206 (48%), Positives = 132/206 (64%), Gaps = 5/206 (2%)
Frame = +1
Query: 112 IRVAGASRQKHTLPELPYEYNALEPVISREIMSLHHSKHHATYINNLNVAEEKLAQAQAK 291
+ +A K TLP LPY YNALEP +S IM LHH KHH TY+NNLN A+EKLA
Sbjct: 16 VSIARGVHTKATLPPLPYAYNALEPALSETIMKLHHDKHHQTYVNNLNAAQEKLADPNL- 74
Query: 292 GDIDTIINLAPALKFNGGGHINHSIFWHNLSP---NGGKP--SDVLTKAVEKDFGSWDNI 456
D++ + L A+KFNGGGHINHS+FW L+P GGKP S L KA+ +GS ++
Sbjct: 75 -DLEGEVALQAAIKFNGGGHINHSLFWKILAPQKEGGGKPVTSGSLHKAITSKWGSLEDF 133
Query: 457 KNQLSTASVAVQGSGWGWLGYNKQMKKLQIATCQNQDPLQATTGLVPLFGIDVWEHAYYL 636
+ +++ A ++QGSGW WL +K L+I T NQD + + P+ GID WEHAYY
Sbjct: 134 QKEMNAALASIQGSGWAWLIVDKD-GSLRITTTANQDTIVKSK---PIIGIDAWEHAYYP 189
Query: 637 QYKNVRADYVKAIFDVANWNDISQRY 714
QY+N +A+Y KAI++V NW + RY
Sbjct: 190 QYENRKAEYFKAIWNVINWKEAESRY 215
>SPBC3H7.04 |||mitochondrial ribosomal protein subunit
S26|Schizosaccharomyces pombe|chr 2|||Manual
Length = 220
Score = 56.4 bits (130), Expect = 4e-09
Identities = 36/138 (26%), Positives = 64/138 (46%), Gaps = 16/138 (11%)
Frame = +1
Query: 352 INHSIFWHNL-SPNG-GKPSDV----LTKAVEKDFGSWDNIKNQLSTASVAVQGSGWGWL 513
+NH F+ L SP +D+ L ++ FGS+ +K+Q+ +V G GW WL
Sbjct: 76 VNHDFFFSGLISPERPSADADLGAINLKPGIDASFGSFGELKSQMVDVGNSVFGDGWLWL 135
Query: 514 GYNKQMKKLQIATCQNQD---------PLQATTGLVPLFGIDVWEHAYYLQY-KNVRADY 663
Y+ + + N P T +VPL +++W++AY Y N + Y
Sbjct: 136 VYSPEKSLFSLLCTYNASNAFLWGTGFPKFRTNAIVPLLCVNLWQYAYLDDYGLNGKKMY 195
Query: 664 VKAIFDVANWNDISQRYE 717
+ +D+ NW ++ R++
Sbjct: 196 ITKWWDMINWTVVNNRFQ 213
>SPBC16A3.14 |||mitochondrial ribosomal protein subunit
S26|Schizosaccharomyces pombe|chr 2|||Manual
Length = 277
Score = 42.3 bits (95), Expect = 8e-05
Identities = 53/230 (23%), Positives = 94/230 (40%), Gaps = 36/230 (15%)
Frame = +1
Query: 142 HTLPELPYEYNALEPVISREIMSLHHSKHHATYINNLN--VAEEKLAQAQAKGDIDTIIN 315
HT+P L + N L P+ S E + + +H + LN V +L + I
Sbjct: 39 HTVPNLS-QRNLL-PLFSPEALDIAWDQHQRQVVKELNDRVKGTELEDSSVFNIIFQTAA 96
Query: 316 L---APALKFNGGGHINHSIFWHNLSPNGG--------KPSDVLTKAVEKDFGSWDNIKN 462
L A +F + NH F + + + + KAV ++FGS +N+ +
Sbjct: 97 LPEHAATFQFASQAYNNHFFFQSLIGKRAADAKKNSKYEANAAINKAVNENFGSKENLLS 156
Query: 463 QLSTASVAVQGSGWGWL---GYNKQ--MKKLQIAT------CQNQDPLQATT-------- 585
++ + G+ W W+ YN+ ++ Q + Q+ DP ++
Sbjct: 157 KIHELASNSFGACWLWIVIDDYNRLNLLRTFQAGSPYLWTRWQSNDPHLISSVPDYSARP 216
Query: 586 ---GLVPLFGIDVWEHAYYLQYKNV-RADYVKAIFDVANWNDISQRYEKS 723
VP+ + +W HAYY Y + R+ Y+ FD +W+ I +R S
Sbjct: 217 RKYAHVPILNLCLWNHAYYKDYGLLNRSRYIDTWFDCIDWSVIEERLTNS 266
>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 781
Score = 32.3 bits (70), Expect = 0.081
Identities = 31/110 (28%), Positives = 47/110 (42%)
Frame = +1
Query: 133 RQKHTLPELPYEYNALEPVISREIMSLHHSKHHATYINNLNVAEEKLAQAQAKGDIDTII 312
RQKHT P P +A S HH HH+ N L EK K + ++
Sbjct: 97 RQKHTAPATPIPVSA----------SRHHKPHHSGLKNLL----EKAMHPGHKSNANSPT 142
Query: 313 NLAPALKFNGGGHINHSIFWHNLSPNGGKPSDVLTKAVEKDFGSWDNIKN 462
+ +P+ F G IN+ I N S + P + + + K S+ ++KN
Sbjct: 143 SESPSKGF--GSFINNHILHKNTSSHPSSPVNGKSSDIHKS-QSYQHLKN 189
>SPBC12C2.04 |||NAD binding dehydrogenase family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 384
Score = 29.9 bits (64), Expect = 0.43
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +1
Query: 223 KHHATYINNLNVAEEKLAQAQAKGDIDTIINLAPAL-KFNGGGHINHSIFWHNLSPNGG 396
K+HA K+ QA K D +N+A + ++N N+ +FW +S +GG
Sbjct: 157 KYHAIISIGYMFRYLKIVQAAKKYVADNNLNIACTIARYNSAYEHNNKLFWWYMSKSGG 215
>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1101
Score = 29.1 bits (62), Expect = 0.75
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -3
Query: 666 HVVGTNVLVLKIVRVLPYIDSEERDQSSGGLQRIL 562
H +V ++K + +P +D+EER + GLQ I+
Sbjct: 409 HTYVRSVEIIKNIAEMPTVDAEERSRIFAGLQHII 443
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 27.1 bits (57), Expect = 3.0
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +1
Query: 556 QNQDPLQATTGLVPLFGIDVW 618
++ DPL+AT+ +PLF + W
Sbjct: 2142 KHTDPLRATSDFIPLFSMQRW 2162
>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 26.2 bits (55), Expect = 5.3
Identities = 8/18 (44%), Positives = 15/18 (83%)
Frame = +2
Query: 575 RPPLDWSRSSESMYGSTR 628
+PPL WS SS +++G+++
Sbjct: 101 KPPLTWSPSSANLFGTSK 118
>SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 560
Score = 26.2 bits (55), Expect = 5.3
Identities = 19/72 (26%), Positives = 31/72 (43%)
Frame = +1
Query: 523 KQMKKLQIATCQNQDPLQATTGLVPLFGIDVWEHAYYLQYKNVRADYVKAIFDVANWNDI 702
KQ++ + DP QA+ +V + GI YL+ N D + + V W
Sbjct: 398 KQLENQDLIDLLTDDPTQASVHMVTMMGIHPNSLLDYLEQYNSSFDKIIG-YKVTGWT-- 454
Query: 703 SQRYEKSAQVNN 738
Q E AQ+++
Sbjct: 455 FQPLENRAQLSS 466
>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 811
Score = 25.8 bits (54), Expect = 7.0
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 321 CKVDNGVDITFSLCLCEFLFSNV 253
C VD+ +I+ SLC EF+ S V
Sbjct: 452 CLVDSFENISHSLCTTEFILSRV 474
>SPCC1795.02c ||SPCC895.01|CaCA proton/calcium
exchanger|Schizosaccharomyces pombe|chr 3|||Manual
Length = 412
Score = 25.8 bits (54), Expect = 7.0
Identities = 12/51 (23%), Positives = 28/51 (54%)
Frame = -3
Query: 768 N*IGLTDFFEIIHLSAFFISLRYIIPVGYIENSFHVVGTNVLVLKIVRVLP 616
N +G+T + + +S++F + +P+G I F +V +L ++ ++P
Sbjct: 48 NVVGMT---KSVLMSSYFNLMLVFVPIGLIAGWFEWNAKSVFILNMLAIIP 95
>SPBC1A4.06c |||mitochondrial matrix protein import
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 383
Score = 25.8 bits (54), Expect = 7.0
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = +1
Query: 574 QATTGLVPLFGIDVWEHAYYLQYKNVRADYVKAIFDVANWNDISQRYEKS--AQVNNF 741
QA + +G V+ A Y Q +N D++ + D W+ I+ + S + V NF
Sbjct: 69 QAPIDVAVGYGSGVFRQAGYSQKENPMIDFIFQVEDPVKWHKINLQQNPSHYSFVKNF 126
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 25.4 bits (53), Expect = 9.3
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -2
Query: 541 AISSFVCCSQANPSLSPVLPQKLSTVDSLCYPRIQSLSQRL 419
A SFV S N + P++ Q+ + + C+ R QSL ++
Sbjct: 499 AKGSFVIQSHINGRVIPLIKQRFESFATECFIRPQSLKLKV 539
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.4 bits (53), Expect = 9.3
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -3
Query: 243 DISRVMFAVMKTHDFTANDRLQCIVLVRK 157
D V+F+ KT ANDRLQCI+ ++
Sbjct: 3138 DQQNVLFSKTKT----ANDRLQCIIQTKQ 3162
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,208,619
Number of Sequences: 5004
Number of extensions: 69799
Number of successful extensions: 201
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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