Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2g04
         (442 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   1.7  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    23   1.7  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    22   2.2  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    22   2.2  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    22   2.2  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    22   2.2  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    22   2.2  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    22   2.2  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    22   2.2  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           22   2.2  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    22   2.2  
AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    21   5.2  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    21   5.2  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    21   6.9  
AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory recept...    21   6.9  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +3

Query: 174  TATKVTWTSTVARK-FAAKNTSHATISRECTGLSAPMSGSTSGTTSAPKA 320
            T T   WT+T  R+    + T+ +T +R  T      +  T GTT  P A
Sbjct: 1046 TTTSPWWTTTTTRRTTTTRPTTTSTTTRPTT-----TNWPTQGTTIPPPA 1090


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 9/38 (23%), Positives = 19/38 (50%)
 Frame = -1

Query: 250 EIVAWLVFFAANFLATVEVHVTLVAVPRLILVREPWVE 137
           E  A L+F    ++ ++     L    +L+L+ E W++
Sbjct: 201 ESAAQLIFMNVQWVRSIPAFTCLPLSDQLLLLEESWLD 238


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +3

Query: 90  ICLR*SNRPPTSKQHLSTH 146
           IC +   RP T K HL TH
Sbjct: 254 ICGKSYARPSTLKTHLRTH 272


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 16/65 (24%), Positives = 25/65 (38%)
 Frame = +3

Query: 114 PPTSKQHLSTHGSLTKIRRGTATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGST 293
           PP S   LST  +    +    T     ST      A +T+   +S   +  S+  S   
Sbjct: 122 PPRSTPPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTTSQNLSSPASSTSSTSSTEK 181

Query: 294 SGTTS 308
           +GT +
Sbjct: 182 AGTNN 186


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 16/65 (24%), Positives = 25/65 (38%)
 Frame = +3

Query: 114 PPTSKQHLSTHGSLTKIRRGTATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGST 293
           PP S   LST  +    +    T     ST      A +T+   +S   +  S+  S   
Sbjct: 122 PPRSTPPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPASSTSSTSSTEK 181

Query: 294 SGTTS 308
           +GT +
Sbjct: 182 AGTNN 186


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 16/65 (24%), Positives = 25/65 (38%)
 Frame = +3

Query: 114 PPTSKQHLSTHGSLTKIRRGTATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGST 293
           PP S   LST  +    +    T     ST      A +T+   +S   +  S+  S   
Sbjct: 122 PPRSTPPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPASSTSSTSSTEK 181

Query: 294 SGTTS 308
           +GT +
Sbjct: 182 AGTNN 186


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 16/65 (24%), Positives = 25/65 (38%)
 Frame = +3

Query: 114 PPTSKQHLSTHGSLTKIRRGTATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGST 293
           PP S   LST  +    +    T     ST      A +T+   +S   +  S+  S   
Sbjct: 122 PPRSTPPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPASSTSSTSSTEK 181

Query: 294 SGTTS 308
           +GT +
Sbjct: 182 AGTNN 186


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 16/65 (24%), Positives = 25/65 (38%)
 Frame = +3

Query: 114 PPTSKQHLSTHGSLTKIRRGTATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGST 293
           PP S   LST  +    +    T     ST      A +T+   +S   +  S+  S   
Sbjct: 122 PPRSTPPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPASSTSSTSSTEK 181

Query: 294 SGTTS 308
           +GT +
Sbjct: 182 AGTNN 186


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 16/65 (24%), Positives = 25/65 (38%)
 Frame = +3

Query: 114 PPTSKQHLSTHGSLTKIRRGTATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGST 293
           PP S   LST  +    +    T     ST      A +T+   +S   +  S+  S   
Sbjct: 78  PPRSTPPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPASSTSSTSSTEK 137

Query: 294 SGTTS 308
           +GT +
Sbjct: 138 AGTNN 142


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 16/65 (24%), Positives = 25/65 (38%)
 Frame = +3

Query: 114 PPTSKQHLSTHGSLTKIRRGTATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGST 293
           PP S   LST  +    +    T     ST      A +T+   +S   +  S+  S   
Sbjct: 122 PPRSTPPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPASSTSSTSSTEK 181

Query: 294 SGTTS 308
           +GT +
Sbjct: 182 AGTNN 186


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 16/65 (24%), Positives = 25/65 (38%)
 Frame = +3

Query: 114 PPTSKQHLSTHGSLTKIRRGTATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGST 293
           PP S   LST  +    +    T     ST      A +T+   +S   +  S+  S   
Sbjct: 122 PPRSTPPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPASSTSSTSSTEK 181

Query: 294 SGTTS 308
           +GT +
Sbjct: 182 AGTNN 186


>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
           protein.
          Length = 136

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +3

Query: 111 RPPTSKQHLSTH 146
           RP T K HL TH
Sbjct: 5   RPSTLKTHLRTH 16


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = -1

Query: 85  CSPYYYLAVSWIYFNRKW 32
           C  YY + V+  Y  R W
Sbjct: 77  CFNYYVIVVTTFYKRRTW 94


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = -1

Query: 331 TGEGAFGALVVPLVDPLIGAERP 263
           TG G   A ++P++  L+  + P
Sbjct: 204 TGSGKTAAFMLPIIHNLLSDKNP 226


>AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory receptor
           candidate 15 protein.
          Length = 455

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +2

Query: 350 VPDALIYFDLF 382
           VP  L+YFD+F
Sbjct: 223 VPRVLMYFDIF 233


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,701
Number of Sequences: 336
Number of extensions: 2426
Number of successful extensions: 15
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9880622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)