Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc2g04
(442 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1442.08c |cox12||cytochrome c oxidase subunit VIb|Schizosacc... 97 1e-21
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 29 0.24
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 3.0
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo... 26 3.0
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy... 26 3.0
SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 3.9
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 25 5.2
SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 6.8
SPAC806.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 6.8
SPAC869.11 ||SPAC922.08c|amino acid permease, unknown 6|Schizosa... 24 9.0
SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown 7|Schizos... 24 9.0
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 24 9.0
>SPCC1442.08c |cox12||cytochrome c oxidase subunit
VIb|Schizosaccharomyces pombe|chr 3|||Manual
Length = 83
Score = 97.1 bits (231), Expect = 1e-21
Identities = 37/64 (57%), Positives = 46/64 (71%)
Frame = +2
Query: 146 RFPNQNQTRHCYQSYVDFHRCQKVRGEKYEPCYYFKRVYRSLCPNEWVDKWDNQRAEGTF 325
RFPN NQT+HC+QSY+D+ RC K +GE + PC F Y+SLCP EWV++WD QR GTF
Sbjct: 20 RFPNTNQTKHCFQSYIDYFRCIKAKGEDFVPCKQFWHAYQSLCPMEWVERWDEQRENGTF 79
Query: 326 AGRI 337
I
Sbjct: 80 PAPI 83
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 29.5 bits (63), Expect = 0.24
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = +3
Query: 174 TATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGSTSGTTSAPKAPSPV 332
T++ V TST A NTS + S S P++ ST TS P S V
Sbjct: 2353 TSSTVVNTSTPITSSTALNTSTSITSSSVLNSSTPITSSTVVNTSTPITSSSV 2405
Score = 28.7 bits (61), Expect = 0.42
Identities = 19/53 (35%), Positives = 23/53 (43%)
Frame = +3
Query: 174 TATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGSTSGTTSAPKAPSPV 332
T++ V TST A NTS S S P++ ST TS P S V
Sbjct: 1117 TSSTVVNTSTPITSSTALNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTV 1169
Score = 28.7 bits (61), Expect = 0.42
Identities = 19/53 (35%), Positives = 23/53 (43%)
Frame = +3
Query: 174 TATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGSTSGTTSAPKAPSPV 332
T++ V TST A NTS S S P++ ST TS P S V
Sbjct: 2761 TSSTVVNTSTPITSSTALNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTV 2813
Score = 26.6 bits (56), Expect = 1.7
Identities = 18/53 (33%), Positives = 22/53 (41%)
Frame = +3
Query: 174 TATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGSTSGTTSAPKAPSPV 332
T++ V TST NTS S S P++ ST TS P S V
Sbjct: 1177 TSSTVVNTSTPITSSTVVNTSTPITSSTVVNSSTPITSSTVLNTSTPITSSSV 1229
Score = 26.6 bits (56), Expect = 1.7
Identities = 18/53 (33%), Positives = 22/53 (41%)
Frame = +3
Query: 174 TATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGSTSGTTSAPKAPSPV 332
T++ V TST NTS S S P++ ST TS P S V
Sbjct: 1489 TSSTVVNTSTPITSSTVVNTSTPITSSTVVNSSTPITSSTVLNTSTPITSSSV 1541
Score = 25.0 bits (52), Expect = 5.2
Identities = 17/53 (32%), Positives = 22/53 (41%)
Frame = +3
Query: 174 TATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGSTSGTTSAPKAPSPV 332
T++ V TST NTS S S P++ ST +S P S V
Sbjct: 1357 TSSTVVNTSTPITSSTVVNTSTPITSSTVVNSSTPITSSTVLNSSTPITSSSV 1409
Score = 25.0 bits (52), Expect = 5.2
Identities = 17/53 (32%), Positives = 22/53 (41%)
Frame = +3
Query: 174 TATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGSTSGTTSAPKAPSPV 332
T++ V TST NTS S S P++ ST +S P S V
Sbjct: 2197 TSSTVVNTSTPITSSTVVNTSTPITSSTVVNSSTPITSSTVLNSSTPITSSSV 2249
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.8 bits (54), Expect = 3.0
Identities = 20/74 (27%), Positives = 39/74 (52%)
Frame = +3
Query: 105 SNRPPTSKQHLSTHGSLTKIRRGTATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMS 284
S+ P ++ +S+ S + T + + +S+ + ++ +S +TIS + S+P S
Sbjct: 297 SSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFS-SSPTSSSSTIS---SSSSSPSS 352
Query: 285 GSTSGTTSAPKAPS 326
S S TTS+ K+ S
Sbjct: 353 SSFSSTTSSSKSSS 366
>SPCC4G3.09c |gyp3||GTPase activating protein
Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 635
Score = 25.8 bits (54), Expect = 3.0
Identities = 12/53 (22%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +2
Query: 107 KSPADLKTAPFDPRFPNQNQTRHCYQSYVDFHRCQKVRG-EKYEPCYYFKRVY 262
++ ++ +++ DP P + + +C +Y + +K+RG +KY+P + +Y
Sbjct: 183 ETQSEKRSSQTDPSLPFKTNSLNCDVTYEEGPLTKKLRGPKKYKPSHSSWDIY 235
>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 786
Score = 25.8 bits (54), Expect = 3.0
Identities = 25/70 (35%), Positives = 28/70 (40%), Gaps = 3/70 (4%)
Frame = +3
Query: 132 HLSTHGSLTKIRRGTATKVTWTSTVARKFAAKNTSHATISREC-TGLSAPMSG--STSGT 302
H ST + T T T T T T R A NTS+ + S G SA S T
Sbjct: 141 HSSTTANRTTSTPTTTTART-TRTTPRPTATTNTSNQSTSNSTRNGTSAATSNGTGTGAG 199
Query: 303 TSAPKAPSPV 332
T A SPV
Sbjct: 200 TGASHRSSPV 209
>SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 569
Score = 25.4 bits (53), Expect = 3.9
Identities = 24/65 (36%), Positives = 32/65 (49%)
Frame = +3
Query: 117 PTSKQHLSTHGSLTKIRRGTATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGSTS 296
PT KQ L+ H +RR T+ + T+T + A NT+ T S SA S STS
Sbjct: 486 PTGKQ-LALH----PLRRETSI-LDSTNTTSTN--ATNTTTTTSSSSTASSSASASSSTS 537
Query: 297 GTTSA 311
T+ A
Sbjct: 538 ATSGA 542
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 25.0 bits (52), Expect = 5.2
Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
Frame = +3
Query: 108 NRPPTSKQHL---STHGSLTKIRRGTATKVTWTSTVARKFAAKNTSHATISRECTGLSAP 278
NRPP +T + T K T + ++ + TS A+ + SAP
Sbjct: 1024 NRPPAPAMQARPNTTQAAAPVTSTTTTIKQATTVSASKPAPSTVTSAASSPSNISKPSAP 1083
Query: 279 MSGSTSGTTSAPKAPSP 329
++ + S ++ P P P
Sbjct: 1084 VANNVSKPSAVPPPPPP 1100
>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 176
Score = 24.6 bits (51), Expect = 6.8
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = -1
Query: 238 WLVFFAANFLATVEVHVTLVAVPRLILVREPWVERCCFEVGGRFDHLRHIDCSPY 74
+LVF A + +++VP L P+ CF F L H+ CS Y
Sbjct: 4 FLVFSACEVFVGFSLCTLVISVPFFFLQMTPFYSILCFL--SFFALLLHLPCSIY 56
>SPAC806.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 72
Score = 24.6 bits (51), Expect = 6.8
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = -3
Query: 302 CPTCRPTHWGRETCTL 255
CPT PT W +CT+
Sbjct: 3 CPTHGPTTWNPHSCTV 18
>SPAC869.11 ||SPAC922.08c|amino acid permease, unknown
6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 24.2 bits (50), Expect = 9.0
Identities = 14/55 (25%), Positives = 24/55 (43%)
Frame = -1
Query: 208 ATVEVHVTLVAVPRLILVREPWVERCCFEVGGRFDHLRHIDCSPYYYLAVSWIYF 44
A+V ++ +L+ + +V + V G F+ P + AVSW YF
Sbjct: 109 ASVIINYSLIGIMMFFIVYALGEMAVAYPVAGGFNTYATRFIDPAWGFAVSWNYF 163
>SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown
7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 581
Score = 24.2 bits (50), Expect = 9.0
Identities = 15/61 (24%), Positives = 26/61 (42%)
Frame = -1
Query: 226 FAANFLATVEVHVTLVAVPRLILVREPWVERCCFEVGGRFDHLRHIDCSPYYYLAVSWIY 47
FA A+V ++ L+ + + ++ + V G F+ P + AVSW Y
Sbjct: 103 FADGGPASVIINYILIGIMMIFVIYALGELAIAYPVAGSFNTYATRFIDPAWGFAVSWNY 162
Query: 46 F 44
F
Sbjct: 163 F 163
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 24.2 bits (50), Expect = 9.0
Identities = 11/48 (22%), Positives = 25/48 (52%)
Frame = +3
Query: 183 KVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGSTSGTTSAPKAPS 326
+ T +++++ + +TS AT++ +S+ + SAP+A S
Sbjct: 303 RTTEVPSISKQLSKSSTSIATVAPSLASVSSVTKSPSPTPQSAPRAQS 350
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,770,359
Number of Sequences: 5004
Number of extensions: 35748
Number of successful extensions: 112
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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