Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2g04
         (442 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0210 + 15470680-15470715,15473088-15473342,15473417-154734...    97   4e-21
07_03_1305 - 25638531-25638584,25638909-25638990,25639087-256391...    97   6e-21
04_04_0390 - 24882572-24882577,24882928-24883009,24883089-248832...    79   2e-15
02_05_1031 - 33626527-33626580,33627482-33627563,33628892-33628911     58   2e-09
02_05_0546 + 29889861-29890182,29891057-29892798                       31   0.41 
09_06_0272 - 21962495-21962524,21962742-21962918                       31   0.54 
05_05_0223 - 23406814-23407477,23407597-23407919                       31   0.54 
06_01_0728 - 5356400-5356676,5356888-5357090,5357181-5357474,535...    30   0.72 
04_04_0293 - 24189344-24189350,24189804-24190026,24190411-241905...    30   0.95 
02_05_1072 - 33878676-33878747,33878926-33879949,33880684-338808...    30   0.95 
04_04_0692 - 27307349-27307728,27308381-27308546                       29   1.7  
04_02_0017 - 8572400-8572732,8572818-8572919,8573138-8573230,857...    29   2.2  
05_01_0431 + 3412178-3412336,3413012-3413109,3413185-3413312,341...    28   2.9  
08_02_0703 - 20188489-20190246                                         28   3.8  
12_01_0314 - 2395113-2395760,2396151-2396738,2397218-2397252,239...    27   8.8  
09_04_0320 - 16656620-16657243,16658198-16659106                       27   8.8  
04_01_0142 + 1640472-1640611,1641618-1641744,1642233-1642425,164...    27   8.8  
03_05_0451 - 24456923-24457069,24457161-24457310,24457408-244575...    27   8.8  

>03_03_0210 +
           15470680-15470715,15473088-15473342,15473417-15473499,
           15473617-15473698,15474886-15474939
          Length = 169

 Score = 97.5 bits (232), Expect = 4e-21
 Identities = 39/75 (52%), Positives = 49/75 (65%)
 Frame = +2

Query: 107 KSPADLKTAPFDPRFPNQNQTRHCYQSYVDFHRCQKVRGEKYEPCYYFKRVYRSLCPNEW 286
           K    ++TAP D RFP  NQTRHC+  YV++HRC   +GE    C  F + YRSLCP EW
Sbjct: 93  KPEIKIETAPADFRFPTTNQTRHCFTRYVEYHRCVAAKGEDAPECDKFAKYYRSLCPGEW 152

Query: 287 VDKWDNQRAEGTFAG 331
           V++W+ QR  GTF G
Sbjct: 153 VERWNEQRENGTFPG 167


>07_03_1305 -
           25638531-25638584,25638909-25638990,25639087-25639169,
           25639252-25639515,25639984-25640060,25640183-25640277,
           25640953-25641065
          Length = 255

 Score = 97.1 bits (231), Expect = 6e-21
 Identities = 37/75 (49%), Positives = 50/75 (66%)
 Frame = +2

Query: 107 KSPADLKTAPFDPRFPNQNQTRHCYQSYVDFHRCQKVRGEKYEPCYYFKRVYRSLCPNEW 286
           K    ++TAP D RFP  NQTRHC+  Y+++HRC   +GE    C  F + YRSLCP+EW
Sbjct: 179 KPEIKIETAPADFRFPTTNQTRHCFTRYIEYHRCVAAKGEGAPECEKFAKYYRSLCPSEW 238

Query: 287 VDKWDNQRAEGTFAG 331
           +++W+ QR  GTF G
Sbjct: 239 IERWNEQRENGTFPG 253


>04_04_0390 -
           24882572-24882577,24882928-24883009,24883089-24883200,
           24883411-24883441
          Length = 76

 Score = 78.6 bits (185), Expect = 2e-15
 Identities = 30/56 (53%), Positives = 38/56 (67%)
 Frame = +2

Query: 119 DLKTAPFDPRFPNQNQTRHCYQSYVDFHRCQKVRGEKYEPCYYFKRVYRSLCPNEW 286
           ++KTAP D RFP  NQTRHC+  Y+++HRC   +GE    C  F + YRSLCP EW
Sbjct: 20  EIKTAPADFRFPTTNQTRHCFTRYIEYHRCVNAKGEATADCEKFAKYYRSLCPAEW 75


>02_05_1031 - 33626527-33626580,33627482-33627563,33628892-33628911
          Length = 51

 Score = 58.4 bits (135), Expect = 2e-09
 Identities = 21/42 (50%), Positives = 29/42 (69%)
 Frame = +2

Query: 206 CQKVRGEKYEPCYYFKRVYRSLCPNEWVDKWDNQRAEGTFAG 331
           C + +GE  + C  + + YRSLCP EW+++W  QRA GTFAG
Sbjct: 8   CIEAKGEGSDECTKYAKCYRSLCPGEWIERWKEQRANGTFAG 49


>02_05_0546 + 29889861-29890182,29891057-29892798
          Length = 687

 Score = 31.1 bits (67), Expect = 0.41
 Identities = 20/74 (27%), Positives = 32/74 (43%)
 Frame = +3

Query: 108 NRPPTSKQHLSTHGSLTKIRRGTATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSG 287
           N PP   +  +T+G+L K    T  +    +  +    AKN    T S + T    P++G
Sbjct: 98  NGPPNLVRTGATYGNLNKSFHDTCARSNLNAVQSSNPVAKNQDTKTASIDATA-GNPLTG 156

Query: 288 STSGTTSAPKAPSP 329
             +  + AP  P P
Sbjct: 157 HHATPSVAPVPPKP 170


>09_06_0272 - 21962495-21962524,21962742-21962918
          Length = 68

 Score = 30.7 bits (66), Expect = 0.54
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 344 GSKSYRRRCLRRAGCPTCRPTHWGRET 264
           G   +R++     G P CRP HW R T
Sbjct: 11  GGGDFRQKVWSMTGGPYCRPVHWRRNT 37


>05_05_0223 - 23406814-23407477,23407597-23407919
          Length = 328

 Score = 30.7 bits (66), Expect = 0.54
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +3

Query: 216 FAAKNTSHATISRECTGLSAPMSGSTSGTTSAPKAPS 326
           FA+ N   A++S  C+G  A  +  TS  +S P+AP+
Sbjct: 219 FASSNGGDASVSWPCSGDDAQNNSETSHESSPPEAPA 255


>06_01_0728 -
           5356400-5356676,5356888-5357090,5357181-5357474,
           5357940-5358063,5358157-5359496
          Length = 745

 Score = 30.3 bits (65), Expect = 0.72
 Identities = 23/81 (28%), Positives = 31/81 (38%)
 Frame = +3

Query: 114 PPTSKQHLSTHGSLTKIRRGTATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGST 293
           PP S   L    SLTK +          S+ A   A+  +SHA+ +       A  +G  
Sbjct: 76  PPASAALLRRRSSLTKPKSRFVEPAAPPSSAAAAAASSTSSHASPAH-----PAAAAGGG 130

Query: 294 SGTTSAPKAPSPVGFRS*TFP 356
           SG  S P  P+        FP
Sbjct: 131 SGAASTPHTPAEADDEEEVFP 151


>04_04_0293 -
           24189344-24189350,24189804-24190026,24190411-24190529,
           24191331-24191578
          Length = 198

 Score = 29.9 bits (64), Expect = 0.95
 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
 Frame = +3

Query: 171 GTATKVTWTSTVARKFAA------KNTSHATISRECTGLSAPMSGSTSGTTSAPKAPSPV 332
           G A K T  +  ARK  A      K T+ A  + + T  +AP S + S    +P+APSPV
Sbjct: 17  GPAPKATAPAGPARKAPAAAGPAPKATAPAGPAPKATATAAPSSKAPSPAAPSPEAPSPV 76


>02_05_1072 -
           33878676-33878747,33878926-33879949,33880684-33880804,
           33881150-33881560,33881781-33881933,33882321-33882468
          Length = 642

 Score = 29.9 bits (64), Expect = 0.95
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = +3

Query: 123 SKQHLSTHGSLT-KIRRGTATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGSTSG 299
           +K HLS  G+    + +G AT +  T  + +K+  + T   +      GLS  MSG+   
Sbjct: 314 NKYHLSLPGNQKGNLGQGLATSLGQTQ-MQQKWIHEETDDLSTILSGNGLSNGMSGTLQS 372

Query: 300 TTSAPKAP 323
            TS+P  P
Sbjct: 373 VTSSPLLP 380


>04_04_0692 - 27307349-27307728,27308381-27308546
          Length = 181

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 21/63 (33%), Positives = 27/63 (42%)
 Frame = +3

Query: 138 STHGSLTKIRRGTATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGSTSGTTSAPK 317
           S    L   + GT T VT T +  R F   +T H     + T   A +SGS +G T   K
Sbjct: 78  SAANPLRSYKDGT-TIVTLTRSGTRYFICGSTGHCGAGMKLTVTVATLSGSAAGGTRLAK 136

Query: 318 APS 326
             S
Sbjct: 137 PSS 139


>04_02_0017 -
           8572400-8572732,8572818-8572919,8573138-8573230,
           8573391-8573519,8573781-8574025,8574184-8574453,
           8574590-8574752,8575965-8576063
          Length = 477

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = -3

Query: 392 DLIKTNRNKLKHRERLGSKSYR 327
           +L KTNR+K+K+    GS+SY+
Sbjct: 306 ELNKTNRSKVKYHHTTGSRSYK 327


>05_01_0431 +
           3412178-3412336,3413012-3413109,3413185-3413312,
           3413770-3413881,3414309-3414489,3414714-3414896,
           3415133-3415315,3416062-3416131,3416413-3416522,
           3416604-3416908,3417079-3417175,3417622-3417765,
           3418217-3418303,3418387-3418473,3418566-3418706,
           3418805-3418930,3419166-3419264,3419690-3419757,
           3420275-3420341,3420713-3420883,3420959-3421048,
           3421831-3421911,3423397-3423470,3423784-3423855,
           3423925-3424017,3424138-3424204
          Length = 1030

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 10/38 (26%), Positives = 22/38 (57%)
 Frame = +2

Query: 245 YFKRVYRSLCPNEWVDKWDNQRAEGTFAGRI*ILNVPD 358
           +F R ++ L PNEW++ ++    +   +G +  L++ D
Sbjct: 879 HFLRGFQQLIPNEWINMFNEHEFQVLISGSLESLDIDD 916


>08_02_0703 - 20188489-20190246
          Length = 585

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
 Frame = +3

Query: 93  CLR*SNRPPTSKQHLSTHGSLTKIRRGTATKVTWTSTVARKFAAKNTSHATISRECTGLS 272
           C R    PP      +       + R        T+TVA    A+++S+ + S   +  S
Sbjct: 112 CARHGRAPPAPPS--AAEAREAALLRAVPAAAARTTTVAAMVPARSSSNLSCSSRASAAS 169

Query: 273 APMSGSTS--GTTSAPKA 320
              SGS+S   T   P+A
Sbjct: 170 TSSSGSSSEMATVEVPRA 187


>12_01_0314 -
           2395113-2395760,2396151-2396738,2397218-2397252,
           2397546-2397632,2397913-2397985,2398648-2398714,
           2398795-2398931,2400196-2400217,2400733-2400807,
           2402281-2402365,2402605-2403334
          Length = 848

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 19/48 (39%), Positives = 24/48 (50%)
 Frame = -3

Query: 341 SKSYRRRCLRRAGCPTCRPTHWGRETCTLS*NSSMARIFRRELSGNGG 198
           S+  RRR LRRA C  CR     R + T +    M R +RR   G+ G
Sbjct: 113 SQRQRRRLLRRAVCAVCR-----RSSTTATRCERMTR-WRRGWKGSNG 154


>09_04_0320 - 16656620-16657243,16658198-16659106
          Length = 510

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 144 HGSLTKIRRGTATKVTWTSTVARKFAAKNTSHATISR 254
           HG +  ++ GTAT V  +S  A + A +   H   +R
Sbjct: 68  HGPVMSLKLGTATAVVASSAAAARDALQRYDHVLAAR 104


>04_01_0142 +
           1640472-1640611,1641618-1641744,1642233-1642425,
           1642793-1643349
          Length = 338

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
 Frame = -3

Query: 347 LGSKSYRR-RCLRRAGCPTCRPTHWGRETCTLS*NSSMARIFRRELSGNGGSPR 189
           +G K  R   C   AG P      WG        + +M    RR L GN G+P+
Sbjct: 1   MGGKRERLCHCAHLAGQPPLLTAGWGGRRERARRSHAMPTGRRRSLQGNDGTPK 54


>03_05_0451 -
           24456923-24457069,24457161-24457310,24457408-24457513,
           24457715-24458040,24458129-24458263,24458350-24458430,
           24458516-24458704,24458794-24458986,24459068-24459174,
           24459280-24459354,24459446-24459601,24459745-24459828,
           24459933-24460046,24460119-24460214,24460302-24460392,
           24460500-24460615,24460878-24461037,24461964-24462217
          Length = 859

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 12/45 (26%), Positives = 19/45 (42%)
 Frame = +3

Query: 162 IRRGTATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGSTS 296
           + + T T V W   V  K    +     +S  C+G++A   G  S
Sbjct: 190 LSKATGTAVDWVQMVGMKPGPDSIGIIAVSHNCSGVAARACGLVS 234


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,809,799
Number of Sequences: 37544
Number of extensions: 243860
Number of successful extensions: 766
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)