Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2g02
         (454 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    25   0.33 
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    25   0.33 
AF265213-1|AAF75277.1|  143|Tribolium castaneum putative cytochr...    21   5.4  
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    20   9.4  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    20   9.4  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 25.0 bits (52), Expect = 0.33
 Identities = 9/22 (40%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = +3

Query: 39  LSLNPWRRICRVRCPCA-LACP 101
           L +N W  +  ++CP A L CP
Sbjct: 601 LMINQWENVTNIQCPNADLPCP 622


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 25.0 bits (52), Expect = 0.33
 Identities = 9/22 (40%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = +3

Query: 39  LSLNPWRRICRVRCPCA-LACP 101
           L +N W  +  ++CP A L CP
Sbjct: 601 LMINQWENVTNIQCPNADLPCP 622


>AF265213-1|AAF75277.1|  143|Tribolium castaneum putative cytochrome
           P450 monooxigenaseCYP4Q3 protein.
          Length = 143

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +2

Query: 212 LLYVNKSR*RRGARMQLITYAPRVPFKDGVIDLRLIFIGRLFSYP 346
           +L  N    + G  +Q I    +V F+D ++D  +  +G L   P
Sbjct: 10  MLLANHKNVQVGDLVQKIAQKLQVLFQDQIVDEMVTVLGDLHRKP 54


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = -3

Query: 230 IYLHTTSTLRRWDLW 186
           I+ H TS  R W  W
Sbjct: 105 IFGHETSCTRYWTCW 119


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 307 PQINIYRPTVFVSAH 351
           PQ+  YRPT  ++ H
Sbjct: 243 PQMQSYRPTGNITPH 257


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,487
Number of Sequences: 336
Number of extensions: 2173
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10301074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)