Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2f24
         (634 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8MRA9 Cluster: RE49550p; n=2; Sophophora|Rep: RE49550p...    46   8e-04
UniRef50_Q176U5 Cluster: Putative uncharacterized protein; n=1; ...    42   0.009
UniRef50_Q24GL4 Cluster: Putative uncharacterized protein; n=1; ...    33   4.3  
UniRef50_Q7RFS8 Cluster: CPSF A subunit region, putative; n=3; P...    33   7.5  
UniRef50_Q4S1C7 Cluster: Chromosome 13 SCAF14769, whole genome s...    32   10.0 
UniRef50_A0X6E4 Cluster: Putative uncharacterized protein precur...    32   10.0 
UniRef50_Q6FLQ6 Cluster: Pre-mRNA-splicing factor RSE1; n=1; Can...    32   10.0 

>UniRef50_Q8MRA9 Cluster: RE49550p; n=2; Sophophora|Rep: RE49550p -
           Drosophila melanogaster (Fruit fly)
          Length = 518

 Score = 46.0 bits (104), Expect = 8e-04
 Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
 Frame = +3

Query: 12  TLSKVKNKQRLYIGL-PQELCFIIGLIEKHTNVSEQNIILCLMRITLNRTFSQLADDFDL 188
           TL  V+    L++G+ PQ L  +   I ++ NV+  +  L L ++  N  F+ LA+ F+L
Sbjct: 211 TLGLVEQAPLLHLGVAPQHLSLLKRHICRNANVTHLDCCLTLRKLKQNEHFALLAEHFEL 270

Query: 189 SVSQASNIFFNKLPEIANVISPLVR 263
           S S   + F   L ++A  + PL+R
Sbjct: 271 SESDVEDTFKRTLIKLARYLRPLIR 295


>UniRef50_Q176U5 Cluster: Putative uncharacterized protein; n=1;
           Aedes aegypti|Rep: Putative uncharacterized protein -
           Aedes aegypti (Yellowfever mosquito)
          Length = 478

 Score = 42.3 bits (95), Expect = 0.009
 Identities = 22/78 (28%), Positives = 45/78 (57%)
 Frame = +3

Query: 15  LSKVKNKQRLYIGLPQELCFIIGLIEKHTNVSEQNIILCLMRITLNRTFSQLADDFDLSV 194
           L  V     L++GL +   F++  + +  ++++++IIL L +I LN   ++LA  F L+ 
Sbjct: 179 LQMVHEFPTLFLGLRRNRIFLVNSLAQTFDLNQRDIILTLRKIKLNEHNARLASVFGLTD 238

Query: 195 SQASNIFFNKLPEIANVI 248
           S+   +F   +P+IA+ +
Sbjct: 239 SEVDILFRTSVPKIADCL 256


>UniRef50_Q24GL4 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 642

 Score = 33.5 bits (73), Expect = 4.3
 Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = -1

Query: 346 YLKTFYFPPS*HQLSFLHIYLLYCF-FYSLTRGDITFAISGSLL 218
           Y  TFYFPP  + ++F+   L+Y F  YS+    I+F IS ++L
Sbjct: 58  YGSTFYFPPPLNVINFIFTPLIYFFPKYSILINKISFQISYTVL 101


>UniRef50_Q7RFS8 Cluster: CPSF A subunit region, putative; n=3;
           Plasmodium (Vinckeia)|Rep: CPSF A subunit region,
           putative - Plasmodium yoelii yoelii
          Length = 2227

 Score = 32.7 bits (71), Expect = 7.5
 Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 2/101 (1%)
 Frame = -1

Query: 385 DYLFN*RVL*VANYLKTFYF-PPS*HQLSFLHIYLLYCFFYSLTRGDITFAISGSLLKNI 209
           DY++   VL + NY K  YF   S +  +   +    C FY  T  +ITF IS   +K  
Sbjct: 456 DYIY---VLNLENYKKVIYFFNTSCYMNNIFQLIKNNCLFYDYTYFNITFKISNIYVKKN 512

Query: 208 LLA*LTDKSKSSAN*ENVLFNVI-LIRHNIIFCSETFVCFS 89
            +  +  KS         + N+  LI+ N IF  ++++ ++
Sbjct: 513 KIFIINKKSIIEGTISKDINNLTNLIKWNQIFNFKSYINYT 553


>UniRef50_Q4S1C7 Cluster: Chromosome 13 SCAF14769, whole genome
           shotgun sequence; n=3; Tetraodontidae|Rep: Chromosome 13
           SCAF14769, whole genome shotgun sequence - Tetraodon
           nigroviridis (Green puffer)
          Length = 279

 Score = 32.3 bits (70), Expect = 10.0
 Identities = 20/63 (31%), Positives = 31/63 (49%)
 Frame = +3

Query: 399 RKFCKYFHSSFKNY*TDFNKTFMLVFYGQQLIIILILFSTNVLNMGLYI*KGINVNVM*P 578
           RK C   H   K +  +F  TF+LV +G   +   +L S N+L   L +  G +V +M  
Sbjct: 2   RKHCAIKHGILKEFLAEFLGTFVLVLFGCGAVAQTVL-SRNMLGEPLTVHIGFSVGLMMA 60

Query: 579 LYL 587
            Y+
Sbjct: 61  AYV 63


>UniRef50_A0X6E4 Cluster: Putative uncharacterized protein
           precursor; n=1; Shewanella pealeana ATCC 700345|Rep:
           Putative uncharacterized protein precursor - Shewanella
           pealeana ATCC 700345
          Length = 606

 Score = 32.3 bits (70), Expect = 10.0
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
 Frame = +3

Query: 27  KNKQRLYIGLPQ-ELCFIIGLIEKHTNVSEQNIILCLMRITLNRTFSQLADDFDLSVSQA 203
           KNK  +  G  Q ++   +GLI + +N  EQ I+L   R+  +   +  A  F    S  
Sbjct: 225 KNKSFIPAGSDQAQIKLQLGLINQASNTLEQMILLKDDRVAFDNYLAPNAHWFGSDASTL 284

Query: 204 SNIFFNKLPEIAN 242
            +I+F+ LPE  N
Sbjct: 285 HDIYFDILPEEDN 297


>UniRef50_Q6FLQ6 Cluster: Pre-mRNA-splicing factor RSE1; n=1;
           Candida glabrata|Rep: Pre-mRNA-splicing factor RSE1 -
           Candida glabrata (Yeast) (Torulopsis glabrata)
          Length = 1296

 Score = 32.3 bits (70), Expect = 10.0
 Identities = 21/60 (35%), Positives = 29/60 (48%)
 Frame = +3

Query: 78  IGLIEKHTNVSEQNIILCLMRITLNRTFSQLADDFDLSVSQASNIFFNKLPEIANVISPL 257
           I +I KHTN++   + LCLM   +  TF         + S+  NI  N +P    V SPL
Sbjct: 388 ISVISKHTNINPIALNLCLME-NMPLTFMHFQGGNRTTDSEKVNIIRNAIPLKEYVSSPL 446


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 575,170,123
Number of Sequences: 1657284
Number of extensions: 11385040
Number of successful extensions: 24090
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 23141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24084
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 46881492319
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)