Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2f24
         (634 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    29   0.42 
SPBC16A3.12c |||triglyceride lipase-cholesterol esterase |Schizo...    27   1.7  
SPAC1F5.08c |yam8|ehs1|calcium transport protein|Schizosaccharom...    25   6.9  

>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
           Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 29.5 bits (63), Expect = 0.42
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
 Frame = +1

Query: 253 PLLDYKKNNTINIYAGRIIDVNLVENRKFLDSLPPTKLFN*ISNPYL*IGSFVSIFT-LH 429
           PLL  K+   +++ AGR+ D  ++   K    L P  L    SN Y+   +  ++   L 
Sbjct: 753 PLLGSKRRELVSVAAGRLADNQMIVYNKKNGYLIPKDLGRIASNYYINYQTVSTLNNLLK 812

Query: 430 SKTTEQILIRLL 465
           SK +E  +I LL
Sbjct: 813 SKMSEADIIALL 824


>SPBC16A3.12c |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 443

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +3

Query: 63  ELCFIIGL-IEKHTNVSEQNIILCLMRIT 146
           E+C   G  +E+H   ++ N ILCL RIT
Sbjct: 77  EICEAFGYRVEEHLVRTQDNFILCLHRIT 105


>SPAC1F5.08c |yam8|ehs1|calcium transport
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -1

Query: 295 HIYLLYCFFYSLTRGDITFAISGSLLKNILLA*LTDKSKSSAN 167
           H+ L   FF+S+TR       +  LL N +   + D+S +  N
Sbjct: 7   HLILKILFFWSITRNIFGATYTSLLLNNTINGNINDQSTAYYN 49


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,590,865
Number of Sequences: 5004
Number of extensions: 54421
Number of successful extensions: 118
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)