Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2f24
         (634 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY121689-1|AAM52016.1|  518|Drosophila melanogaster RE49550p pro...    46   4e-05
AE013599-2450|AAF57878.2|  518|Drosophila melanogaster CG6568-PA...    46   4e-05

>AY121689-1|AAM52016.1|  518|Drosophila melanogaster RE49550p
           protein.
          Length = 518

 Score = 46.0 bits (104), Expect = 4e-05
 Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
 Frame = +3

Query: 12  TLSKVKNKQRLYIGL-PQELCFIIGLIEKHTNVSEQNIILCLMRITLNRTFSQLADDFDL 188
           TL  V+    L++G+ PQ L  +   I ++ NV+  +  L L ++  N  F+ LA+ F+L
Sbjct: 211 TLGLVEQAPLLHLGVAPQHLSLLKRHICRNANVTHLDCCLTLRKLKQNEHFALLAEHFEL 270

Query: 189 SVSQASNIFFNKLPEIANVISPLVR 263
           S S   + F   L ++A  + PL+R
Sbjct: 271 SESDVEDTFKRTLIKLARYLRPLIR 295


>AE013599-2450|AAF57878.2|  518|Drosophila melanogaster CG6568-PA
           protein.
          Length = 518

 Score = 46.0 bits (104), Expect = 4e-05
 Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
 Frame = +3

Query: 12  TLSKVKNKQRLYIGL-PQELCFIIGLIEKHTNVSEQNIILCLMRITLNRTFSQLADDFDL 188
           TL  V+    L++G+ PQ L  +   I ++ NV+  +  L L ++  N  F+ LA+ F+L
Sbjct: 211 TLGLVEQAPLLHLGVAPQHLSLLKRHICRNANVTHLDCCLTLRKLKQNEHFALLAEHFEL 270

Query: 189 SVSQASNIFFNKLPEIANVISPLVR 263
           S S   + F   L ++A  + PL+R
Sbjct: 271 SESDVEDTFKRTLIKLARYLRPLIR 295


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,031,403
Number of Sequences: 53049
Number of extensions: 485233
Number of successful extensions: 822
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2641708800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)