Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2f24
         (634 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    22   4.3  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    22   4.3  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    22   4.3  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   4.3  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   4.3  

>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 61  CGRPIYKRCLFFTLDK 14
           CG     RCL +T+DK
Sbjct: 133 CGERTEGRCLHYTVDK 148


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 61  CGRPIYKRCLFFTLDK 14
           CG     RCL +T+DK
Sbjct: 138 CGERTEGRCLHYTVDK 153


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 61  CGRPIYKRCLFFTLDK 14
           CG     RCL +T+DK
Sbjct: 138 CGERTEGRCLHYTVDK 153


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +2

Query: 200 SKQYIFQQTPRNCKCNITPC*TIKKTIQ 283
           SK+ +   TP+  KC++     IKK ++
Sbjct: 270 SKKKLSPATPKGSKCSMITTPEIKKEVE 297


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -2

Query: 255 GVILHLQFLGV 223
           GV++HLQ LGV
Sbjct: 30  GVLIHLQILGV 40


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,105
Number of Sequences: 438
Number of extensions: 3950
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)