Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc2f22
(602 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo... 177 8e-46
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo... 177 1e-45
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 28 0.91
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 28 1.2
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch... 28 1.2
SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 27 2.8
SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB comp... 25 6.4
SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual 25 8.5
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 25 8.5
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe... 25 8.5
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 8.5
SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces ... 25 8.5
>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 177 bits (432), Expect = 8e-46
Identities = 89/177 (50%), Positives = 121/177 (68%), Gaps = 2/177 (1%)
Frame = +1
Query: 1 ILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXX 180
++KV S++LRAGKGK+RNRR +QR+GPL++FN+D G+ +AFRNIPGVE
Sbjct: 180 VVKVANSRKLRAGKGKLRNRRHVQRRGPLVVFNEDAGIVKAFRNIPGVEIVNVRRLNLLQ 239
Query: 181 XAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIR 360
APGGHLGRFVIWT+SAFG LD +FGS ++ KKN+ LP+ ++N D+TRL+ SDEI+
Sbjct: 240 LAPGGHLGRFVIWTKSAFGLLDSVFGSTTEAAQLKKNYFLPENIISNADVTRLINSDEIQ 299
Query: 361 KVLRAPN-KRVIRA-TRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKNLKALAD 525
+++A RV RA +K NPL N + +LNPYA KA ++L K KA +
Sbjct: 300 SIVKAAGPSRVKRAHVQKKNPLKNKAVLARLNPYAKAY--KANVKLNTGKTPKAAGE 354
>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 177 bits (431), Expect = 1e-45
Identities = 88/177 (49%), Positives = 121/177 (68%), Gaps = 2/177 (1%)
Frame = +1
Query: 1 ILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXX 180
++KV S++LRAGKGK+RNRR +QR+GPL++FN+D G+ +AFRNIPGVE
Sbjct: 180 VIKVANSRKLRAGKGKLRNRRHVQRRGPLVVFNEDTGIVKAFRNIPGVEIVNVRRLNLLQ 239
Query: 181 XAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIR 360
APGGHLGRFVIWT+SAFG LD +FGS ++ KKN+ LP+ ++N D+TRL+ SDEI+
Sbjct: 240 LAPGGHLGRFVIWTKSAFGLLDSVFGSTTEVAQLKKNYFLPENIISNADVTRLINSDEIQ 299
Query: 361 KVLRAPN-KRVIRA-TRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKNLKALAD 525
+++A RV RA +K NPL N + +LNPYA KA +++ K KA +
Sbjct: 300 SIVKAAGPSRVKRAHVQKKNPLKNKAVLSRLNPYAKAY--KANVKINSEKTPKAAGE 354
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 28.3 bits (60), Expect = 0.91
Identities = 19/54 (35%), Positives = 33/54 (61%)
Frame = -3
Query: 459 RVRIEFQHRLVIGERVQFACSTDHAFVGSTEDLPDLIRLEKTCEVSVGHLWLGQ 298
+V +EF+ RL IG+RV+ AF+GS E + L+ + +T + ++ L LG+
Sbjct: 207 QVAVEFRKRLNIGDRVKDGLLYKDAFLGS-EAVDVLMHIVRTTDRNLA-LLLGR 258
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 27.9 bits (59), Expect = 1.2
Identities = 19/59 (32%), Positives = 29/59 (49%)
Frame = +1
Query: 277 KQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNP 453
KQK + + Q K LT+ S E + VL +R T+K LTN+ ++K +P
Sbjct: 730 KQKAHLSADQCKQLANVLTQA--SPEAKTVLEQHRLSEMRKTKKQTELTNSAHVIKPSP 786
>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 27.9 bits (59), Expect = 1.2
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +2
Query: 200 LDVSSSGLSPHSAGLTPYSGHGRHHRNKRRTSTCPSQRWPTLTSH 334
+D+ S+ LS H+ T +S R H ST PSQ + + SH
Sbjct: 299 VDLQSNELSHHNVRTTLFSDDSRFHSKIHTHSTPPSQMY-SAASH 342
>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 497
Score = 26.6 bits (56), Expect = 2.8
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +2
Query: 206 VSSSGLSPHSAGLTPYSGHGRHHRNK 283
VS S HS P+S GRH+R K
Sbjct: 120 VSRSSSIGHSGSTAPWSSVGRHNRKK 145
>SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB complex
subunit Brf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 500
Score = 25.4 bits (53), Expect = 6.4
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
Frame = +1
Query: 325 DLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAM-LKLNPYAAVLKRKAILELRRR 501
++T LK DE+RK+ N + L + +++ + L+ + K + +EL
Sbjct: 366 EVTETLKGDELRKISLQVNVKFSEEEVTLEDVDDDEIEDILLDKDEILTKTQVWMEL--- 422
Query: 502 KNLKALADAEKSGLKLSKRNPAMKAEKLRERRR 600
N LA+ E LKL + + R+RRR
Sbjct: 423 -NKDYLAEEEAKNLKLQEDLKKGIVRQPRKRRR 454
>SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 656
Score = 25.0 bits (52), Expect = 8.5
Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 4/83 (4%)
Frame = -3
Query: 240 PAECGLSPDDETSKMTSRSQLQEVQLVNIQELHTGDVAEG----ASQTLILVEDYEGPLT 73
P E SP S TS Q + + Q+L V++ S T ++ + YE PLT
Sbjct: 93 PRELQTSPI--VSPTTSPKQTPSINVTEPQDLELDKVSQDHEKDQSNTYLMEDGYEFPLT 150
Query: 72 LDTTTVAHFTLTSTKTLRLVHLK 4
D + T HL+
Sbjct: 151 RDLIRRSKSDADQTPPTGFKHLR 173
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex subunit
Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 25.0 bits (52), Expect = 8.5
Identities = 20/70 (28%), Positives = 36/70 (51%)
Frame = +1
Query: 391 IRATRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKNLKALADAEKSGLKLSKRNPAM 570
I+ +K+N L + L+ ++ L+ K LR+ L+ + D +K KLSK M
Sbjct: 865 IKLMKKVNILESRLLSNPLHNFSE-LEEKYAEYLRKLALLEEVKDLKK---KLSKARSIM 920
Query: 571 KAEKLRERRR 600
+ ++L R+R
Sbjct: 921 QLDELNSRKR 930
>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 687
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -3
Query: 582 FLSLHSGVSLRQL*STLLGISQSLQVLPSAQL 487
F+SL G +L + ++ L ++QSL +P +L
Sbjct: 360 FISLEGGYNLDSISTSALAVAQSLLGIPPGRL 391
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.0 bits (52), Expect = 8.5
Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 5/96 (5%)
Frame = +1
Query: 265 KTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLK 444
KTPS +K+ P P + N D L ++ V + P+ + TR + P ++ +
Sbjct: 586 KTPSPEKQKVLSPPPIITNFDKETLASNEAHEAVPQKPS--APQVTRLMAPQDSSSVVTP 643
Query: 445 -----LNPYAAVLKRKAILELRRRKNLKALADAEKS 537
L+P AV K ++ + A AD E +
Sbjct: 644 SPTSLLDPARAVRKVIDGIDPPKEAGAGATADVESA 679
>SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 607
Score = 25.0 bits (52), Expect = 8.5
Identities = 15/59 (25%), Positives = 26/59 (44%)
Frame = +1
Query: 238 RLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLN 414
RL+ +W ++ +PQ K + + LK DEIR+ V+ + +LN
Sbjct: 259 RLESAKTNWVYAKGERFAVAVPQSKQVSFATKKELKKDEIRRSYSYGGSSVVFGSDELN 317
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,246,601
Number of Sequences: 5004
Number of extensions: 43137
Number of successful extensions: 143
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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