Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc2f22
(602 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0578 + 4295386-4296489,4297394-4297507 171 3e-43
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 169 2e-42
03_02_0027 + 5100865-5100878,5102241-5102708,5102795-5103021,510... 31 0.70
11_01_0205 + 1617044-1617197,1617845-1618233 30 1.6
02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216 30 1.6
09_02_0570 + 10786779-10787144,10787353-10787547,10787647-107878... 29 2.1
02_04_0073 - 19471254-19472681 29 2.8
01_01_0612 + 4565422-4565481,4565597-4565671,4565760-4566332,456... 29 3.7
09_04_0151 - 15154063-15154296,15155616-15155660,15155749-151558... 28 6.5
08_02_0934 + 22747742-22748644 28 6.5
03_03_0125 - 14630078-14630136,14630197-14631160 28 6.5
03_03_0122 - 14617879-14618871 28 6.5
01_06_0160 - 27095727-27096008,27096164-27096652,27096983-270971... 28 6.5
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 171 bits (417), Expect = 3e-43
Identities = 86/181 (47%), Positives = 119/181 (65%), Gaps = 2/181 (1%)
Frame = +1
Query: 7 KVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQG-LTRAFRNIPGVEXXXXXXXXXXXX 183
K S +R GKGKMRNRR I RKGPLI++ + + +AFRN+PGV+
Sbjct: 186 KAKDSVGIRPGKGKMRNRRYINRKGPLIVYGTEGSKIVKAFRNLPGVDVANVERLNLLDL 245
Query: 184 APGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRK 363
APGGHLGRFVIWT+SAF +L+ ++G+++ PS +KK F LP+PKMAN DL R++ SDE++
Sbjct: 246 APGGHLGRFVIWTESAFKKLEEVYGTFEAPSLKKKGFILPRPKMANADLGRIINSDEVQS 305
Query: 364 VLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAIL-ELRRRKNLKALADAEKSG 540
V++ NK V R ++ NPL N A+LKLNPY ++ A L E R K K D++++
Sbjct: 306 VVKPLNKEVKRREKRKNPLKNVAAVLKLNPYFGTARKMATLAEAARIKARKEKLDSKRTK 365
Query: 541 L 543
L
Sbjct: 366 L 366
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 169 bits (410), Expect = 2e-42
Identities = 88/194 (45%), Positives = 120/194 (61%), Gaps = 2/194 (1%)
Frame = +1
Query: 7 KVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQG-LTRAFRNIPGVEXXXXXXXXXXXX 183
K S +RAGKGKMRNRR I RKGPLI++ + + +AFRN+PGV+
Sbjct: 185 KTKDSVAIRAGKGKMRNRRYINRKGPLIVYGTEGSKVVKAFRNLPGVDVANVERLNLLDL 244
Query: 184 APGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRK 363
APGGHLGRFVIWT+ AF +LD ++G + TP+ +KK F LP+PKMAN DL+RL+ SDE++
Sbjct: 245 APGGHLGRFVIWTECAFKKLDEVYGGFDTPALKKKGFVLPRPKMANADLSRLINSDEVQS 304
Query: 364 VLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAIL-ELRRRKNLKALADAEKSG 540
V++ NK V + NPL N A+LKLNPY ++ A L E R K D++++
Sbjct: 305 VVKPINKEVKLREARRNPLKNVAAVLKLNPYFGTARKMAALAEAARVKARTEKLDSKRTK 364
Query: 541 LKLSKRNPAMKAEK 582
L + + A K
Sbjct: 365 LSPEESSKIKAAGK 378
>03_02_0027 +
5100865-5100878,5102241-5102708,5102795-5103021,
5103670-5104577
Length = 538
Score = 31.1 bits (67), Expect = 0.70
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Frame = +2
Query: 170 TS*SWLREVILDVSSSGLSPHSAGLTPYSGHGRHHRNKRRTSTCPSQ--RWPTLTSHVFS 343
+S S+LR + LD+SSS +P S+ H HH+ + S WP S
Sbjct: 376 SSSSFLRCLGLDMSSSSSAPPSSSGQQQQHHHHHHQETMQVPLPASSLPEWPPRLQPEPS 435
Query: 344 SLMRSGRSSVLPTNA 388
++ SG LP +A
Sbjct: 436 PMLSSGLGLGLPYDA 450
>11_01_0205 + 1617044-1617197,1617845-1618233
Length = 180
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -3
Query: 450 IEFQHRLVIGERVQFACSTDHAFVGSTEDL 361
++ HRLV G+ +F +H FV S ++L
Sbjct: 35 LQISHRLVAGQNYEFQSGINHGFVNSRKNL 64
>02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216
Length = 1030
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = +1
Query: 184 APG--GHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANT 324
APG G GR+V+ SA LDP F SW S++ K F++ + A++
Sbjct: 670 APGVDGCSGRYVV-AASAGNALDPGFCSWDYYSREAKAFHIEEISHASS 717
>09_02_0570 +
10786779-10787144,10787353-10787547,10787647-10787826,
10787925-10788119,10789629-10789727,10789822-10790328,
10790438-10790779
Length = 627
Score = 29.5 bits (63), Expect = 2.1
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Frame = +1
Query: 265 KTPSKQKKNFNLPQPKMANTDLTR---LLKSDEIRKVLRAPNKRVIRATR-KLNPLTNNK 432
K P+KQ K PQ +++ D +R + K + + L A + + + K P +
Sbjct: 409 KMPAKQAKEAPAPQAEVSPKDESRVKAIAKPSKAKSSLDADDDYEAESPKEKPKPKEVDV 468
Query: 433 AMLKLNPYAAVLKRKAILELRRRKNLKALADAEKSGLKLSKRNPAMKAEKLRERRR 600
A LK +++ L L R+K L A+ + + +K E++R RRR
Sbjct: 469 AKLKEIKRQEEMEKNR-LALERKKKLAEKQAAKAAARAQKEAEKKLKREEMRARRR 523
>02_04_0073 - 19471254-19472681
Length = 475
Score = 29.1 bits (62), Expect = 2.8
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +2
Query: 224 SPHSAGLTPYSGHGRHHRNKR 286
+P G +P S HG HHR+++
Sbjct: 20 APRPRGASPLSSHGHHHRSRK 40
>01_01_0612 +
4565422-4565481,4565597-4565671,4565760-4566332,
4566438-4566551,4566676-4567377
Length = 507
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -3
Query: 249 GVKPAECGLSPDDETSKMTSRSQLQEVQLVNIQELHTGDVA 127
G+ A G++ DD+ K SR L + ++N+ +GD A
Sbjct: 147 GLSCARGGVASDDDDDKQASRRALPPMPVLNLSSDSSGDAA 187
>09_04_0151 -
15154063-15154296,15155616-15155660,15155749-15155820,
15155932-15156024,15156282-15156351,15156716-15156912,
15156946-15157215,15158620-15158757,15158841-15158930,
15159041-15159247,15159987-15160154,15160300-15160503,
15160584-15160670,15160748-15160861,15161689-15161835,
15161914-15162063,15162211-15162276,15162376-15162480,
15162625-15162798,15162930-15163154,15163534-15163590,
15163858-15164019,15164234-15164302,15164391-15164471,
15164823-15164925,15165011-15165156,15165285-15165359,
15165441-15165508,15165586-15165667,15165745-15165858,
15166358-15166476,15166692-15166781,15166862-15166988
Length = 1382
Score = 27.9 bits (59), Expect = 6.5
Identities = 27/111 (24%), Positives = 54/111 (48%), Gaps = 2/111 (1%)
Frame = +1
Query: 271 PSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLN 450
P + K + QP + T ++ + + +V K ++ + +TN + ++
Sbjct: 278 PYRDSKLTRILQPALGGNANTAIICNITLAQVHADETKSSLQFASRALRVTNCACVNEIL 337
Query: 451 PYAAVLK--RKAILELRRRKNLKALADAEKSGLKLSKRNPAMKAEKLRERR 597
AA+LK RK I ELR + L++ + E+ L+L + KA++ R++R
Sbjct: 338 TDAALLKRQRKEIEELRAK--LRSELEKERISLELEEEK---KAKEQRDKR 383
>08_02_0934 + 22747742-22748644
Length = 300
Score = 27.9 bits (59), Expect = 6.5
Identities = 22/72 (30%), Positives = 26/72 (36%), Gaps = 1/72 (1%)
Frame = +2
Query: 227 PHSAGLTPYSGHGRHHRNKRRTSTCPSQRWPTLTSHVFSSLMRSGRSSV-LPTNA*SVLH 403
P++A Y GH HHR T+ P S S SG S+ P N V
Sbjct: 152 PYAAAFAAYPGHHHHHR-FAATAAAAMPPPPHYPSWAAGSRYYSGPGSISQPINGSPVAP 210
Query: 404 AN*TRSPITRRC 439
A R P C
Sbjct: 211 AGMWRLPAAASC 222
>03_03_0125 - 14630078-14630136,14630197-14631160
Length = 340
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = +1
Query: 202 GRFVIWTQSAFGRL-DPLFGSWK 267
G FV+W AFG L L G+WK
Sbjct: 127 GGFVVWADRAFGPLAGSLLGTWK 149
>03_03_0122 - 14617879-14618871
Length = 330
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = +1
Query: 202 GRFVIWTQSAFGRL-DPLFGSWK 267
G FV+W AFG L L G+WK
Sbjct: 124 GGFVVWADRAFGPLAGSLLGTWK 146
>01_06_0160 -
27095727-27096008,27096164-27096652,27096983-27097132,
27097656-27097920,27097995-27098274,27100311-27100388,
27100597-27101240,27101334-27101412,27101489-27101612,
27101782-27101882,27102870-27103068
Length = 896
Score = 27.9 bits (59), Expect = 6.5
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -3
Query: 234 ECGLSPDDETSKMTSRSQLQEVQ 166
+CG+ PD+ S++ S+ QEV+
Sbjct: 51 DCGMDPDEAVSRLLSQDTFQEVK 73
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,894,069
Number of Sequences: 37544
Number of extensions: 342152
Number of successful extensions: 984
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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