Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2f22
         (602 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)                89   3e-18
SB_54601| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.72 
SB_16757| Best HMM Match : S-antigen (HMM E-Value=0.56)                29   2.9  
SB_14316| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_23951| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_18738| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_33997| Best HMM Match : Astacin (HMM E-Value=0)                     28   6.7  
SB_31780| Best HMM Match : Pkinase (HMM E-Value=0)                     28   6.7  
SB_45406| Best HMM Match : 7tm_2 (HMM E-Value=5.9)                     27   8.8  
SB_23350| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_22853| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  

>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
          Length = 299

 Score = 88.6 bits (210), Expect = 3e-18
 Identities = 40/67 (59%), Positives = 47/67 (70%)
 Frame = +1

Query: 7   KVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXA 186
           K   S+++RAGKGKMRNRR + RKGPLII+N DQGL +AFRN+PGVE             
Sbjct: 179 KCIDSKKIRAGKGKMRNRRTVMRKGPLIIYNNDQGLRQAFRNLPGVELQHVDRLNLLKLC 238

Query: 187 PGGHLGR 207
           PGGHLGR
Sbjct: 239 PGGHLGR 245



 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 34/82 (41%), Positives = 43/82 (52%)
 Frame = +1

Query: 295 NLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKR 474
           NLP  ++ + D   LLK      + R P  R  RA  K NPL N   ML+LNPYA   KR
Sbjct: 220 NLPGVELQHVDRLNLLKLCPGGHLGR-PKAR--RAIHKKNPLKNLGTMLRLNPYAKSAKR 276

Query: 475 KAILELRRRKNLKALADAEKSG 540
             +L + RR+  K  A A+K G
Sbjct: 277 AEMLTVERRRAAKEAALAKKRG 298


>SB_54601| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1718

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 14/49 (28%), Positives = 29/49 (59%)
 Frame = +1

Query: 268 TPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLN 414
           TP++Q   F   + +++N D++RL  S+    + ++ N RVI+++   N
Sbjct: 802 TPTEQDAEFTANEAEVSNQDISRLSSSEPSPIIPKSINNRVIKSSALSN 850


>SB_16757| Best HMM Match : S-antigen (HMM E-Value=0.56)
          Length = 1566

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
 Frame = +1

Query: 403 RKLNPLTNNK-----AMLKLNPYAAVLKRKA-ILELRRRKNLKALADAEKSGLKLSKRNP 564
           RK  P   NK     A   +  Y A  +R A  +E+RR++  K L   EK   +L  R  
Sbjct: 87  RKSAPFATNKDVRHQAYQHIRDYEADKRRLADSIEIRRQEQAKTLE--EKKRQRLRSREA 144

Query: 565 AMKAEKLRERRR 600
           AM+ ++ +ER R
Sbjct: 145 AMEEKRQKERLR 156


>SB_14316| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1472

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
 Frame = +1

Query: 343 KSDEIRKVLRAPNKRV---IRATRKLNPLTNNKAMLKL 447
           +SD I K+    NK++   ++    L+ LTNNKA LKL
Sbjct: 27  QSDVIHKIPNEANKQIGLRVKCLALLDYLTNNKAQLKL 64


>SB_23951| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 214

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = +2

Query: 206 VSSSGLSPHSAGLTPYSGHGRHHRNKRRTSTCPSQR-WPTLTSHVFSSLMRSGRSSVLPT 382
           + SS L+ H+ G+    GHGR   +      C SQ  WP + S       + G +  LPT
Sbjct: 36  IYSSVLAAHNRGVIFDVGHGRGSFSWTVAELCASQDFWPDVISTDLHVDCQKGPAYDLPT 95

Query: 383 NA*SVLH 403
               +LH
Sbjct: 96  VMTKMLH 102


>SB_18738| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 396

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 24/99 (24%), Positives = 44/99 (44%)
 Frame = +1

Query: 286 KNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAV 465
           K  N  +P++  + L  L   D I +    PNK    +T + NP+     ++K  PY  +
Sbjct: 132 KQPNPSKPELVCSSLLSL--QDAINRAAVEPNKT---STTE-NPIERQSFLVKNRPYFTM 185

Query: 466 LKRKAILELRRRKNLKALADAEKSGLKLSKRNPAMKAEK 582
           L++    EL+++     L  +    +  S   PA  A++
Sbjct: 186 LRKSYDKELKKKAVFLCLIVSNPKKIDESCPKPASAADE 224


>SB_33997| Best HMM Match : Astacin (HMM E-Value=0)
          Length = 507

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 266 RHHRNKRRTSTCPSQRWPTLT 328
           +HHR KR  ++  +Q+WP  T
Sbjct: 223 KHHRGKRAAASSDNQKWPRNT 243


>SB_31780| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 964

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = -3

Query: 225 LSPDDETSKMTSRSQLQEVQLVNIQELHTGDVAEGASQTLILVED 91
           L+ D+E   +   + L++V + +   + T  VA G S TL+L+++
Sbjct: 557 LALDNEDGPVEEVAVLRQVSVPDFNSVGTSSVAMGTSHTLVLLQN 601


>SB_45406| Best HMM Match : 7tm_2 (HMM E-Value=5.9)
          Length = 225

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +1

Query: 466 LKRKAILELRRRKNLKALADAEKSGLKLSKRNPAMKAEKLRERRR 600
           +KR   L LR+ +  K +       L+  KR P +   KLR  +R
Sbjct: 115 MKRAPTLSLRKLRRHKRVPTLSLRKLRRHKRAPTLSLRKLRRHKR 159


>SB_23350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 704

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -3

Query: 114 QTLILVEDYEGPLTLDTTTVAHFTLTSTKTL 22
           Q LIL+  Y   + L+T+++  F+L S KT+
Sbjct: 235 QELILIPYYTEKVALETSSLIEFSLLSAKTI 265


>SB_22853| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 134

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -3

Query: 213 DETSKMTSRSQLQEVQLVNIQE-LHTGDVA 127
           DETS  +SRS++Q   LV   E LH  D++
Sbjct: 39  DETSSPSSRSRIQASSLVKTNEFLHARDIS 68


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,566,238
Number of Sequences: 59808
Number of extensions: 355549
Number of successful extensions: 1309
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1306
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)