Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2f22
         (602 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   159   2e-39
Z68298-10|CAA92607.1| 1034|Caenorhabditis elegans Hypothetical p...    30   1.1  
U21320-7|AAA62533.1|  558|Caenorhabditis elegans Hypothetical pr...    30   1.5  
AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical ...    29   2.6  
Z99267-1|CAB16465.1|  732|Caenorhabditis elegans C33A12.12 protein.    28   4.5  
Z68493-14|CAA92801.1|  732|Caenorhabditis elegans Hypothetical p...    28   4.5  
Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical pr...    28   4.5  
Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical pr...    28   4.5  
AL033537-1|CAA22147.1|  732|Caenorhabditis elegans Hypothetical ...    28   4.5  
AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal pro...    28   5.9  
L15201-5|AAA27943.2|  219|Caenorhabditis elegans Egg laying defe...    27   7.8  
AF016679-4|AAB66158.1|  430|Caenorhabditis elegans Hypothetical ...    27   7.8  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  159 bits (385), Expect = 2e-39
 Identities = 74/167 (44%), Positives = 110/167 (65%), Gaps = 1/167 (0%)
 Frame = +1

Query: 1   ILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXX 180
           I KVY S+R RAGKGK+RNR+  Q+ GP++I+ +D    RAFRNIPGV+           
Sbjct: 179 IEKVYNSKRNRAGKGKLRNRQHKQKLGPVVIYGQDAECARAFRNIPGVDVMNVERLNLLK 238

Query: 181 XAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQ-KKNFNLPQPKMANTDLTRLLKSDEI 357
            APGGHLGR +IWT+SAF +LD ++G+    S Q KK +++P P MAN+D +R+++S+E+
Sbjct: 239 LAPGGHLGRLIIWTESAFKKLDTIYGTTVANSSQLKKGWSVPLPIMANSDFSRIIRSEEV 298

Query: 358 RKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAILELRR 498
            K +RAP K  +      NPL     + KLNPYA++L++ +   +++
Sbjct: 299 VKAIRAPKKNPVLPKVHRNPLKKRTLLYKLNPYASILRKASKANVKK 345


>Z68298-10|CAA92607.1| 1034|Caenorhabditis elegans Hypothetical
           protein F44D12.1 protein.
          Length = 1034

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
 Frame = +2

Query: 203 DVSSSGLSPHSAGLTPYSG---HGRHHRNKRRTSTCPSQRWPTLTSHVFSSLMRSGRSSV 373
           + ++S   P+S   TP S     G+ HR     S      +PT+     SS+M S  S  
Sbjct: 532 NTTTSDARPYSMHFTPTSSTIMEGKPHRRSAVYSPSHPPVYPTIRDDSMSSVMSSSNSIR 591

Query: 374 LPTNA*SVLHAN*TRSPIT 430
           LP+ + S  + N +   +T
Sbjct: 592 LPSTSFSNQYPNNSTCSLT 610


>U21320-7|AAA62533.1|  558|Caenorhabditis elegans Hypothetical
           protein K04G7.1 protein.
          Length = 558

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 19/60 (31%), Positives = 31/60 (51%)
 Frame = +1

Query: 421 TNNKAMLKLNPYAAVLKRKAILELRRRKNLKALADAEKSGLKLSKRNPAMKAEKLRERRR 600
           T++ +  K+N       +K  LE+R  +  + + D E SG +LS   P   A  L++RRR
Sbjct: 353 TSSASPQKMNHEQQRYSQKRHLEMRTGRTTRDMRDYESSGRQLSP-TPTTTAGLLKKRRR 411


>AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18a protein.
          Length = 234

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 6/96 (6%)
 Frame = +1

Query: 277 KQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPY 456
           K+ +NFN+ Q      D+TR +K     K +R   +  I   R   P T N+    L+ +
Sbjct: 138 KRARNFNIGQDIQPKKDVTRFVKWP---KYIRLQRQSAILQKRLKVPPTINQFRTALDSH 194

Query: 457 AAVLKRKAILELR------RRKNLKALADAEKSGLK 546
           +A    K + + R      ++  L+A A+A  +G K
Sbjct: 195 SARQAFKLLDKYRPESSEAKKNRLRARAEARAAGKK 230


>Z99267-1|CAB16465.1|  732|Caenorhabditis elegans C33A12.12 protein.
          Length = 732

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = +1

Query: 322 TDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRK 477
           T++  LLK DEIR++    N R I+  + LN    +++M  ++    +L R+
Sbjct: 551 TNIAILLKYDEIREIFTDENSRTIK--QMLNKFDVSRSMHVISLLTLILSRE 600


>Z68493-14|CAA92801.1|  732|Caenorhabditis elegans Hypothetical
           protein C33A12.12 protein.
          Length = 732

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = +1

Query: 322 TDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRK 477
           T++  LLK DEIR++    N R I+  + LN    +++M  ++    +L R+
Sbjct: 551 TNIAILLKYDEIREIFTDENSRTIK--QMLNKFDVSRSMHVISLLTLILSRE 600


>Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical protein
            F54B3.1b protein.
          Length = 3394

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 15/64 (23%), Positives = 26/64 (40%)
 Frame = +1

Query: 202  GRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPN 381
            G F+  T    G     F   +TP   +  +N   P+ A      +++  +IR +L  P 
Sbjct: 2789 GEFLKKTDLKLGLASTKFHEIRTPFFLRSEWNKDAPRRAGKLFDEVVRESDIRSILEEPL 2848

Query: 382  KRVI 393
            K  +
Sbjct: 2849 KEFV 2852


>Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical protein
            F54B3.1a protein.
          Length = 3396

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 15/64 (23%), Positives = 26/64 (40%)
 Frame = +1

Query: 202  GRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPN 381
            G F+  T    G     F   +TP   +  +N   P+ A      +++  +IR +L  P 
Sbjct: 2789 GEFLKKTDLKLGLASTKFHEIRTPFFLRSEWNKDAPRRAGKLFDEVVRESDIRSILEEPL 2848

Query: 382  KRVI 393
            K  +
Sbjct: 2849 KEFV 2852


>AL033537-1|CAA22147.1|  732|Caenorhabditis elegans Hypothetical
           protein C33A12.12 protein.
          Length = 732

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = +1

Query: 322 TDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRK 477
           T++  LLK DEIR++    N R I+  + LN    +++M  ++    +L R+
Sbjct: 551 TNIAILLKYDEIREIFTDENSRTIK--QMLNKFDVSRSMHVISLLTLILSRE 600


>AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform a protein.
          Length = 265

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 6/96 (6%)
 Frame = +1

Query: 277 KQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPY 456
           K+ +NFN+ Q      D+TR +K     K +R   +  I   R   P T N+    L+  
Sbjct: 35  KRARNFNIGQDIQPKKDVTRFVKWP---KYIRLQRQSAILQKRLKVPPTINQFRTALDSQ 91

Query: 457 AAVLKRKAILELR------RRKNLKALADAEKSGLK 546
           +A    K + + R      ++  L+A A+A  +G K
Sbjct: 92  SARQAFKLLDKYRPESTEAKKNRLRARAEARAAGKK 127


>L15201-5|AAA27943.2|  219|Caenorhabditis elegans Egg laying
           defective protein 5,isoform a protein.
          Length = 219

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = +3

Query: 366 PPCSQQTRDPCYTQIEPAHQ*QGDAETQSLRGRAEEESYLRAAQKEEL 509
           P C   T  P Y   +   Q     +T  L  + ++ SY+   Q+EEL
Sbjct: 94  PQCYPNTAWPNYASSKKGRQTYQRYQTSVLEAKFQQSSYVSKKQREEL 141


>AF016679-4|AAB66158.1|  430|Caenorhabditis elegans Hypothetical
           protein T28C12.3 protein.
          Length = 430

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = -3

Query: 186 SQLQEVQLVNIQELHTG--DVAEGASQTLILVEDYEGPLTLDTTTVAHFTL 40
           S L+  +   ++ LH    +  E + + L++++ +E   TL  TTVA+F+L
Sbjct: 281 SLLKHFEPETLESLHIEILEFDEDSVKELVILDQWEEAKTLSLTTVAYFSL 331


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,594,838
Number of Sequences: 27780
Number of extensions: 256799
Number of successful extensions: 770
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)