Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2f21
         (632 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    22   4.9  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    22   4.9  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    22   4.9  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   8.6  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    21   8.6  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    21   8.6  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    21   8.6  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    21   8.6  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    21   8.6  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    21   8.6  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           21   8.6  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    21   8.6  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    21   8.6  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    21   8.6  

>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 472 LIAIRCRTLVPNATRSYFCHQQQR 543
           +IA    TL+   T +Y+ H+Q+R
Sbjct: 385 IIAPLIATLIATVTVNYYRHKQKR 408


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +2

Query: 350 GKKIKTPTPQDVYWYSSVEP 409
           G++   P PQ  Y+Y+   P
Sbjct: 347 GRQYNYPNPQQQYYYNKNHP 366


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +2

Query: 350 GKKIKTPTPQDVYWYSSVEP 409
           G++   P PQ  Y+Y+   P
Sbjct: 295 GRQYNYPNPQQQYYYNKNHP 314


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +2

Query: 266 IILIDAVMTAPILDLGVCCINHRRDRVVGKKIK 364
           + L  A   AP+LD G    N   + V GK+++
Sbjct: 11  VTLATARNKAPLLDDGTRTRNKAAECVFGKQVR 43


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 294 AVMTASMRMIAPVFSTSTSRHFSKA 220
           A  TAS  + +P  STS++    KA
Sbjct: 158 ATSTASQNLSSPASSTSSTSSTEKA 182


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 294 AVMTASMRMIAPVFSTSTSRHFSKA 220
           A  TAS  + +P  STS++    KA
Sbjct: 158 ATSTASQNLSSPASSTSSTSSTEKA 182


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +2

Query: 350 GKKIKTPTPQDVYWYSSVEP 409
           G +   P+PQ+VY++    P
Sbjct: 52  GSEETPPSPQEVYYHHQTIP 71


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 294 AVMTASMRMIAPVFSTSTSRHFSKA 220
           A  TAS  + +P  STS++    KA
Sbjct: 158 ATSTASQNLSSPASSTSSTSSTEKA 182


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 294 AVMTASMRMIAPVFSTSTSRHFSKA 220
           A  TAS  + +P  STS++    KA
Sbjct: 158 ATSTASQNLSSPASSTSSTSSTEKA 182


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 294 AVMTASMRMIAPVFSTSTSRHFSKA 220
           A  TAS  + +P  STS++    KA
Sbjct: 114 ATSTASQNLSSPASSTSSTSSTEKA 138


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 294 AVMTASMRMIAPVFSTSTSRHFSKA 220
           A  TAS  + +P  STS++    KA
Sbjct: 158 ATSTASQNLSSPASSTSSTSSTEKA 182


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +2

Query: 350 GKKIKTPTPQDVYWYSSVEP 409
           G +   P+PQ+VY++    P
Sbjct: 52  GSEETPPSPQEVYYHHQTIP 71


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +2

Query: 350 GKKIKTPTPQDVYWYSSVEP 409
           G +   P+PQ+VY++    P
Sbjct: 52  GSEETPPSPQEVYYHHQTIP 71


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 294 AVMTASMRMIAPVFSTSTSRHFSKA 220
           A  TAS  + +P  STS++    KA
Sbjct: 158 ATSTASQNLSSPASSTSSTSSTEKA 182


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,630
Number of Sequences: 336
Number of extensions: 3019
Number of successful extensions: 17
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16292796
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)