Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2f21
         (632 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos...    25   9.1  
SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit S...    25   9.1  
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    25   9.1  
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po...    25   9.1  
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces...    25   9.1  

>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 532

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 462 PVPSNRNTLSHSCTERHA 515
           P+PSN  TL  S  +RHA
Sbjct: 385 PIPSNVETLRSSLPQRHA 402


>SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit
           S28|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 288

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +2

Query: 254 NTGAIILIDAVMTAPILDLGVCCINHRRDRVVGKKI 361
           +TG+  +  AV T+ IL L   C NH++D+  GK++
Sbjct: 211 DTGSPEVQAAVYTSRILALSDHCKNHKKDQ-TGKRM 245


>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1260

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
 Frame = +3

Query: 402  WNRCLEHNYTREI--VRLMTTLPVPSNRNTLSHSCTERHAQLFLPPAATISVEGGDACAP 575
            WN  +   Y+  I  +R +    +P N   L           FL P+ T +V GG+    
Sbjct: 1016 WNAPIAITYSSVIYCLRSIINQDIPLNEGCLKPIEIRIPPSCFLNPSETAAVVGGNVLTS 1075

Query: 576  EYPGTASCKSAGVCSSA 626
            +       K+  +C+++
Sbjct: 1076 QRITDVILKAFSICAAS 1092


>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1076

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
 Frame = -2

Query: 610 PADLHDAVPGYSGAHASPPSTEIVAAGGKNNCAWRSVQECDSVLRLD--GTGKVVINLTI 437
           P+D   A P YS + +S P      +G          Q+  S+ +LD  G+G  V    I
Sbjct: 167 PSDTSVASPDYSHSQSSSPIANYQESGNSEEPHKAEEQQQLSIYQLDNPGSGNYVWETVI 226

Query: 436 S 434
           S
Sbjct: 227 S 227


>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 576

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 14/61 (22%), Positives = 27/61 (44%)
 Frame = +3

Query: 414 LEHNYTREIVRLMTTLPVPSNRNTLSHSCTERHAQLFLPPAATISVEGGDACAPEYPGTA 593
           L H+ T +       + +PS   T +++ +  H+ L  P A+T++     A     P  A
Sbjct: 401 LNHSVTGDGEAKQVVITMPSTHFTPANNSSANHSPLMAPNASTLNPSSLGASNLSQPSLA 460

Query: 594 S 596
           +
Sbjct: 461 N 461


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,519,475
Number of Sequences: 5004
Number of extensions: 48295
Number of successful extensions: 123
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)