Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2f21
         (632 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0295 + 2217496-2218092,2218774-2218876,2219140-2219249,221...    33   0.25 
02_02_0028 + 6196453-6196512,6196936-6197320,6197843-6197925,619...    30   1.8  
02_01_0405 - 2952434-2955583                                           30   1.8  
09_04_0161 - 15232074-15232139,15232299-15232406,15233417-152335...    28   5.4  
02_02_0542 - 11352655-11352759,11353320-11353496,11353589-113536...    28   5.4  
02_01_0406 - 2958933-2962076                                           28   5.4  
01_01_0453 - 3361460-3361549,3361660-3361846,3362038-3362139,336...    28   5.4  
03_05_1070 + 30125131-30127029                                         28   7.1  
10_01_0287 - 2982618-2982810,2983111-2983196                           27   9.4  
03_01_0458 - 3521938-3522024,3522133-3522213,3522673-3522806,352...    27   9.4  

>11_01_0295 +
           2217496-2218092,2218774-2218876,2219140-2219249,
           2219328-2219399,2219653-2219814,2220300-2220510,
           2220613-2220948,2221050-2221162
          Length = 567

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -2

Query: 610 PADLHDAVPGYSGAHASPPSTEIVAAGGKNNCAWRSVQE 494
           PADL D + G  G+H  P ST+    G +   A  + +E
Sbjct: 121 PADLKDLIAGLYGSHPQPSSTDAAEVGTQEGSAVAAAEE 159


>02_02_0028 +
           6196453-6196512,6196936-6197320,6197843-6197925,
           6198060-6198183,6198404-6198523,6198595-6198755,
           6198999-6199157,6199272-6199434,6199604-6199729,
           6199775-6199900,6200400-6200764,6201204-6201404,
           6201685-6201794,6201919-6202003,6202553-6202681,
           6202763-6202868,6202984-6203072,6203172-6203474
          Length = 964

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +3

Query: 519 LFLPPAATISVEGGD--ACAPEYPGTASCKSAGVCSSA 626
           L +PP    +V  GD  + A + P  ASC++AG C++A
Sbjct: 99  LQIPPPERRAVGDGDLLSSAGDLPDAASCRAAGSCAAA 136


>02_01_0405 - 2952434-2955583
          Length = 1049

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = +3

Query: 411 CLEHNYTREIVRLMTTLPVPSNRNTLSHSCTERHAQLFLPPAATISVEGGDACAPEYPGT 590
           C +H+    I  L   L +  N  +L+ SCTE+     L     +S +GG A A    GT
Sbjct: 8   CKKHSNKFPIPVLALALVLLINLASLTSSCTEQDRSSLLRFLRELSQDGGLA-ASWQDGT 66

Query: 591 ASCKSAGV-CS 620
             CK  G+ CS
Sbjct: 67  DCCKWDGITCS 77


>09_04_0161 -
           15232074-15232139,15232299-15232406,15233417-15233506,
           15233617-15233733,15234408-15234527,15234930-15236168
          Length = 579

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 315 TPKSRIGAVMTASMRMIAPVFSTSTSRHFSKAR 217
           TP SR+    T + R + PV +T T  H S  R
Sbjct: 89  TPSSRVSTPSTPASRSVTPVRNTVTEGHKSSRR 121


>02_02_0542 -
           11352655-11352759,11353320-11353496,11353589-11353699,
           11355606-11355667,11355739-11355941,11357109-11357281
          Length = 276

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -3

Query: 327 LMQQTPKSRIG-AVMTASMRMIAPVFSTSTSRHFSKARGFIPILILST 187
           L + T K   G  V   + R+I   +  S  RH+ +  G++P ++ ST
Sbjct: 148 LAEPTIKDAFGKCVQQGASRVIVSPYFLSPGRHWKQVDGYLPYVLFST 195


>02_01_0406 - 2958933-2962076
          Length = 1047

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
 Frame = +3

Query: 417 EHNYTREIVRLMTTLPVPSNRNTLSHSCTERHAQLFLPPAATISVEGGDACAPEYPGTAS 596
           +H+    I  L   L +  N  +L+ SCTE+     L     +S +GG   A    GT  
Sbjct: 8   KHSNKFPIPVLALALVLLINLASLTSSCTEQDRSSLLKFIRELSQDGG-LSASWQDGTDC 66

Query: 597 CKSAGV-CSSAG 629
           CK  G+ CS  G
Sbjct: 67  CKWDGIACSQDG 78


>01_01_0453 -
           3361460-3361549,3361660-3361846,3362038-3362139,
           3362239-3362306,3362976-3363175,3363253-3363595,
           3363837-3363893,3364011-3364727,3364805-3365007,
           3365171-3365297
          Length = 697

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 414 LEHNYTREIVRLMTTLPVPSNRNTLS 491
           L+H  TR+++ L    PV +N+N LS
Sbjct: 147 LDHRQTRDLISLFLPAPVRANQNKLS 172


>03_05_1070 + 30125131-30127029
          Length = 632

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/24 (58%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = -2

Query: 538 AAGGKNNCAWRSVQECDS-VLRLD 470
           A GG+   AWRS    DS VLRLD
Sbjct: 521 AGGGRGEAAWRSTATQDSQVLRLD 544


>10_01_0287 - 2982618-2982810,2983111-2983196
          Length = 92

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -3

Query: 621 CYTHPPICMTLFQGTQVHMRHP 556
           CY H P+   L  G Q+   HP
Sbjct: 38  CYIHKPVYQELLHGDQLRFTHP 59


>03_01_0458 - 3521938-3522024,3522133-3522213,3522673-3522806,
            3523189-3523270,3523420-3523692,3523953-3524162,
            3524252-3524337,3525197-3525289,3526003-3526227,
            3526320-3526930,3529328-3529395,3529491-3529679,
            3529773-3529901,3530013-3532484
          Length = 1579

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = -2

Query: 604  DLHDAVPGYSGAHASPPS-TEIVAAGGKNNCAWRSVQECDSVLRLDGTGKVVINLTISRV 428
            ++H+ + GY G      S  +++    K N  W++V+   + L+ +G GK   N  +  +
Sbjct: 1079 EVHNGL-GYPGTRPIASSDVDLIKPTVKVNGVWKNVEYTKATLKANGVGKNAENTKVPTI 1137

Query: 427  *LCSKQR 407
                K R
Sbjct: 1138 PSTQKSR 1144


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,365,049
Number of Sequences: 37544
Number of extensions: 316579
Number of successful extensions: 902
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)