Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2f20
         (257 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.09 |||NADH/NADPH dependent indole-3-acetaldehyde reduc...    31   0.019
SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyc...    29   0.13 
SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism...    28   0.24 
SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomy...    27   0.31 
SPAP32A8.02 |||xylose and arabinose reductase |Schizosaccharomyc...    27   0.31 
SPCC737.06c |||glutamate-cysteine ligase regulatory subunit |Sch...    25   1.3  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    24   2.9  
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su...    23   6.7  
SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|c...    23   6.7  
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb...    23   8.9  

>SPAC19G12.09 |||NADH/NADPH dependent indole-3-acetaldehyde
           reductase AKR3C2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 284

 Score = 31.5 bits (68), Expect = 0.019
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 177 DXWKGMEEAKNLGLAKSIGISNF 245
           + WK ME A   GL  S+G+SNF
Sbjct: 123 EGWKAMETALGTGLVHSVGVSNF 145


>SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 275

 Score = 28.7 bits (61), Expect = 0.13
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 168 DYLDXWKGMEEAKNLGLAKSIGISNF 245
           D ++ WK +E+    G  ++IG+SNF
Sbjct: 116 DRIESWKALEKGVEEGKLRAIGVSNF 141


>SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 27.9 bits (59), Expect = 0.24
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 156 FDIVDYLDXWKGMEEAKNLGLAKSIGISNF 245
           ++ V   + W+ MEE    G  + IGISNF
Sbjct: 139 YEDVPIEETWQAMEELLETGKVRYIGISNF 168


>SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 321

 Score = 27.5 bits (58), Expect = 0.31
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 177 DXWKGMEEAKNLGLAKSIGISNFITT 254
           + WK ME+    G  + IG+SNF  T
Sbjct: 147 ETWKAMEKLLETGKVRHIGLSNFNDT 172


>SPAP32A8.02 |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 27.5 bits (58), Expect = 0.31
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 183 WKGMEEAKNLGLAKSIGISNF 245
           WK MEE  + G  +S+G+SN+
Sbjct: 128 WKAMEEFVDSGDIRSVGVSNY 148


>SPCC737.06c |||glutamate-cysteine ligase regulatory subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 287

 Score = 25.4 bits (53), Expect = 1.3
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 159 DIVDYLDXWKGMEEAKNLGLAKSIGISNF 245
           +I  ++D WK +EE    G   ++G+S F
Sbjct: 154 EIQSWVDTWKLLEEKVGEGKIGTLGVSEF 182


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 24.2 bits (50), Expect = 2.9
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 156  FDIVDYLDXWKGMEEAKN 209
            F IVDYL+ W  M + +N
Sbjct: 1328 FKIVDYLNKWLRMRKKRN 1345


>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
           subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1117

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 179 VQVIYNVETFESRFLMAPLHN 117
           ++++  V   ESR L  PLHN
Sbjct: 865 IKLMKKVNILESRLLSNPLHN 885


>SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 279

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +2

Query: 140 TWIQRFRHCRLLGXL 184
           TW +R  HCR  G L
Sbjct: 41  TWFRRRHHCRWCGKL 55


>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 372

 Score = 22.6 bits (46), Expect = 8.9
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +2

Query: 50  MVDYRHLCP 76
           +VDYRH CP
Sbjct: 352 IVDYRHACP 360


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,038,978
Number of Sequences: 5004
Number of extensions: 18250
Number of successful extensions: 29
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 51555950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)