Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc2f20
(257 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0034 + 22298636-22298952,22299057-22299300,22299395-222995... 42 7e-05
10_01_0070 + 902999-903354,904354-904600,904718-904897,905087-90... 40 2e-04
04_04_0033 + 22295974-22296290,22296441-22296684,22296797-222969... 40 4e-04
04_04_0032 + 22291469-22291818,22292438-22292681,22292873-222930... 40 4e-04
04_01_0350 - 4610444-4610668,4612181-4612969 39 5e-04
03_02_0297 + 7196624-7196931,7198015-7198258,7198385-7198573,719... 39 5e-04
10_01_0066 + 848523-849269,849520-849741 38 0.001
10_01_0065 + 845447-846187,846969-847193 38 0.001
10_01_0069 + 890634-890941,892146-892395,893146-893175,894956-89... 37 0.003
05_05_0085 - 22265143-22265226,22265294-22265602,22266915-222671... 35 0.010
01_06_1338 + 36411536-36411646,36411738-36411791,36411898-364119... 31 0.13
05_05_0084 - 22262007-22262300,22262435-22262707,22263418-222634... 28 1.2
01_06_1336 + 36396904-36397014,36397141-36397191,36397681-363977... 27 1.6
05_05_0196 + 23152389-23152658,23153042-23153092,23153167-231532... 27 2.1
03_02_0055 - 5295466-5295476,5295519-5296635,5296760-5296855,529... 27 2.1
02_02_0642 + 12585531-12586126,12586292-12586371,12586481-125865... 27 2.1
06_03_1204 - 28385702-28385964,28387172-28387412,28387511-283876... 26 3.6
01_06_1337 + 36404245-36404355,36404467-36404517,36405304-364053... 26 3.6
10_08_0636 + 19478723-19478869,19479984-19480212,19480321-194804... 26 4.8
07_01_0317 + 2229894-2230137,2231142-2231233,2231327-2231364,223... 26 4.8
07_01_0316 + 2226010-2226256,2226956-2227047,2227143-2227180,222... 25 6.3
03_06_0515 + 34457933-34458343,34458822-34459000,34459491-344598... 25 6.3
02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679 25 6.3
09_04_0616 + 18977421-18977907,18977984-18978245,18978903-18979149 25 8.4
06_03_1225 + 28538515-28538721,28538799-28539000,28539241-285394... 25 8.4
05_07_0173 + 28140484-28140869,28141079-28141481,28141719-281417... 25 8.4
02_01_0179 - 1227573-1227803,1227916-1228138,1228159-1228185,122... 25 8.4
>04_04_0034 +
22298636-22298952,22299057-22299300,22299395-22299574,
22300819-22300842,22301055-22301285
Length = 331
Score = 41.9 bits (94), Expect = 7e-05
Identities = 24/63 (38%), Positives = 33/63 (52%)
Frame = +3
Query: 63 DIYVLYTIVSFYNRPSWPIVKRSHKKPGFKGFDIVDYLDXWKGMEEAKNLGLAKSIGISN 242
D+Y+++ +S P VKR P D+ W+ MEE LGLAK+IG+SN
Sbjct: 114 DLYLVHWPISVKPGPPMLPVKREDAVP-------FDFEGVWRAMEECHRLGLAKAIGVSN 166
Query: 243 FIT 251
F T
Sbjct: 167 FTT 169
>10_01_0070 +
902999-903354,904354-904600,904718-904897,905087-905332
Length = 342
Score = 40.3 bits (90), Expect = 2e-04
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Frame = +3
Query: 111 WPI---VKRSHKKPGFKG-FDIVDYLDXWKGMEEAKNLGLAKSIGISNF 245
WPI V++ P + F ++D WK MEE + LGL K+IG+SNF
Sbjct: 133 WPIRLRVEQETPSPVYDNDFVMMDMEGVWKDMEECQRLGLTKAIGVSNF 181
>04_04_0033 +
22295974-22296290,22296441-22296684,22296797-22296976,
22297749-22297979
Length = 323
Score = 39.5 bits (88), Expect = 4e-04
Identities = 23/63 (36%), Positives = 33/63 (52%)
Frame = +3
Query: 63 DIYVLYTIVSFYNRPSWPIVKRSHKKPGFKGFDIVDYLDXWKGMEEAKNLGLAKSIGISN 242
D+Y+++ +S P VK+ P D+ W+ MEE LGLAK+IG+SN
Sbjct: 114 DLYLIHLPISVKPGPMVFPVKKEDVVP-------FDFGGVWRAMEECHRLGLAKAIGVSN 166
Query: 243 FIT 251
F T
Sbjct: 167 FTT 169
>04_04_0032 +
22291469-22291818,22292438-22292681,22292873-22293052,
22293843-22294070
Length = 333
Score = 39.5 bits (88), Expect = 4e-04
Identities = 23/50 (46%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = +3
Query: 111 WPI-VKRSHKKPGFKGFDIV--DYLDXWKGMEEAKNLGLAKSIGISNFIT 251
WP+ VK + K DI+ D W+ MEE LGLAK IG+SNF T
Sbjct: 131 WPMSVKPTKPHYPMKREDIMPMDLRGVWQAMEECHQLGLAKMIGVSNFTT 180
>04_01_0350 - 4610444-4610668,4612181-4612969
Length = 337
Score = 39.1 bits (87), Expect = 5e-04
Identities = 17/32 (53%), Positives = 21/32 (65%)
Frame = +3
Query: 150 KGFDIVDYLDXWKGMEEAKNLGLAKSIGISNF 245
+G D W+GMEE LGLA+SIG+SNF
Sbjct: 152 RGLVPFDMEGVWRGMEECHRLGLARSIGVSNF 183
>03_02_0297 +
7196624-7196931,7198015-7198258,7198385-7198573,
7198650-7198874
Length = 321
Score = 39.1 bits (87), Expect = 5e-04
Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Frame = +3
Query: 111 WPI-VKRSHKKPGFKGFDIV--DYLDXWKGMEEAKNLGLAKSIGISNF 245
WP+ +K K F D V D W+ MEE LGLAK+IG+ NF
Sbjct: 117 WPVSMKPGRYKAPFTADDFVPFDMRAVWEAMEECHRLGLAKAIGVCNF 164
>10_01_0066 + 848523-849269,849520-849741
Length = 322
Score = 37.5 bits (83), Expect = 0.001
Identities = 14/21 (66%), Positives = 18/21 (85%)
Frame = +3
Query: 183 WKGMEEAKNLGLAKSIGISNF 245
W+GMEE LGLA++IG+SNF
Sbjct: 149 WRGMEECHRLGLARAIGVSNF 169
>10_01_0065 + 845447-846187,846969-847193
Length = 321
Score = 37.5 bits (83), Expect = 0.001
Identities = 14/21 (66%), Positives = 18/21 (85%)
Frame = +3
Query: 183 WKGMEEAKNLGLAKSIGISNF 245
W+GMEE LGLA++IG+SNF
Sbjct: 147 WRGMEECHRLGLARAIGVSNF 167
>10_01_0069 +
890634-890941,892146-892395,893146-893175,894956-895135,
895418-895669
Length = 339
Score = 36.7 bits (81), Expect = 0.003
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = +3
Query: 162 IVDYLDXWKGMEEAKNLGLAKSIGISNF 245
++D WK MEE + LGL K+IG+SNF
Sbjct: 139 MMDMEGVWKEMEECQRLGLTKAIGVSNF 166
>05_05_0085 -
22265143-22265226,22265294-22265602,22266915-22267187,
22267413-22267500,22267620-22267696,22267791-22267841,
22267967-22268077
Length = 330
Score = 34.7 bits (76), Expect = 0.010
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Frame = +3
Query: 15 DPTPIVXDHTR*WSITDIYVLYTIVSFYNRPSWPIVKRSHKKPGFKGFDIV--DYLDXWK 188
+ P+ D T TD LY I WP+ R K GF G +++ D W
Sbjct: 87 EDVPVALDSTLQDLQTDYVDLYLI-------HWPV--RMKKGAGFGGQNVLPTDIPATWA 137
Query: 189 GMEEAKNLGLAKSIGISNF 245
ME+ + G A++IG+SNF
Sbjct: 138 AMEKLHDSGKARAIGVSNF 156
>01_06_1338 +
36411536-36411646,36411738-36411791,36411898-36411974,
36412108-36412195,36412289-36412561,36412651-36412968
Length = 306
Score = 31.1 bits (67), Expect = 0.13
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +3
Query: 111 WPIVKRSHKKPGFKGFDIVDYLDXWKGMEEAKNLGLAKSIGISNF 245
WP + + + F D W+ ME+ + G A++IG+SNF
Sbjct: 113 WPFQIKKGTELSPENFVKPDIPSTWRAMEQLYDSGKARAIGVSNF 157
>05_05_0084 -
22262007-22262300,22262435-22262707,22263418-22263468,
22263944-22264035,22264715-22264724
Length = 239
Score = 27.9 bits (59), Expect = 1.2
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +3
Query: 183 WKGMEEAKNLGLAKSIGISNF 245
W+ ME+ + G A++IG+SNF
Sbjct: 78 WQAMEKLYDSGKARAIGVSNF 98
>01_06_1336 +
36396904-36397014,36397141-36397191,36397681-36397757,
36397876-36397963,36398616-36398891,36399002-36399250,
36400315-36400398
Length = 311
Score = 27.5 bits (58), Expect = 1.6
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +3
Query: 111 WPI-VKRSHKKPGFKGFDIVDYLDXWKGMEEAKNLGLAKSIGISNF 245
WP VK+ + + D W ME+ + G +++IG+SNF
Sbjct: 112 WPFRVKKGSGISNTEDYIPPDIPSTWGAMEKLYDSGKSRAIGVSNF 157
>05_05_0196 +
23152389-23152658,23153042-23153092,23153167-23153240,
23153356-23153443,23153541-23153738,23153824-23153895,
23154034-23154093,23154194-23154370,23154975-23155064
Length = 359
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +3
Query: 183 WKGMEEAKNLGLAKSIGISNFITTQ 257
W+ ME GL K IG+ NF T+
Sbjct: 190 WREMERLVTDGLVKDIGVCNFSVTK 214
>03_02_0055 -
5295466-5295476,5295519-5296635,5296760-5296855,
5297097-5297263,5297345-5297519,5297521-5297699,
5298004-5298109
Length = 616
Score = 27.1 bits (57), Expect = 2.1
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = -1
Query: 152 FESRFLMAPLHNRP*WAIIETHDSVEDINVCNRPSSXMIXHN 27
F +RF A L N W E H + ED V ++ HN
Sbjct: 293 FAARFRYATLENEMKWYSTEFHQNEEDYKVSDKMVELAEKHN 334
>02_02_0642 +
12585531-12586126,12586292-12586371,12586481-12586539,
12587190-12587462,12587876-12587914,12588086-12588231,
12589495-12589696
Length = 464
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 188 FPGVQVIYNVETFESRFLMAPLHNR 114
FPG+QV N E ++ LM LH++
Sbjct: 153 FPGIQVALNQERIQTSNLMQVLHHK 177
>06_03_1204 -
28385702-28385964,28387172-28387412,28387511-28387664,
28387750-28387981,28388157-28388192,28388365-28388566,
28388661-28388848,28389420-28389505,28389526-28389597,
28389826-28389881,28390266-28390697
Length = 653
Score = 26.2 bits (55), Expect = 3.6
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 141 PGFKGFDIVDYLDXWKGMEEAKNLG 215
PGF+ FD + +D G E + LG
Sbjct: 245 PGFRKFDFIQIVDATDGFSEKRILG 269
>01_06_1337 +
36404245-36404355,36404467-36404517,36405304-36405337,
36405428-36405485,36405499-36405586,36406110-36406385,
36406505-36406753,36407558-36407641
Length = 316
Score = 26.2 bits (55), Expect = 3.6
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 168 DYLDXWKGMEEAKNLGLAKSIGISNF 245
D W ME+ + G +++IG+SNF
Sbjct: 137 DIPSTWAAMEKLYDSGKSRAIGVSNF 162
>10_08_0636 +
19478723-19478869,19479984-19480212,19480321-19480414,
19480598-19480721,19480922-19481023,19481103-19481254,
19481353-19481446,19481642-19481827
Length = 375
Score = 25.8 bits (54), Expect = 4.8
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +3
Query: 183 WKGMEEAKNLGLAKSIGISNF 245
W G+ E GL +++G+SN+
Sbjct: 189 WDGLVEMYEKGLVRAVGVSNY 209
>07_01_0317 +
2229894-2230137,2231142-2231233,2231327-2231364,
2231695-2231717,2232026-2232132,2232208-2232370,
2232581-2232663,2232775-2232837,2233049-2233072,
2233119-2233304
Length = 340
Score = 25.8 bits (54), Expect = 4.8
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +3
Query: 138 KPGFKGFDIVDYLDXWKGMEEAKNLGLAKSIGISNF 245
+PG G + YLD G+ +A GL K++G+SN+
Sbjct: 125 RPGIWGNE--GYLD---GLGDAYEQGLVKAVGVSNY 155
>07_01_0316 +
2226010-2226256,2226956-2227047,2227143-2227180,
2227289-2227450,2227540-2227562,2227673-2227744,
2227858-2228025,2228318-2228400,2228533-2228595,
2228735-2228917
Length = 376
Score = 25.4 bits (53), Expect = 6.3
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +3
Query: 141 PGFKGFDIVDYLDXWKGMEEAKNLGLAKSIGISNF 245
PG G + YLD G+ +A GL K++G+SN+
Sbjct: 181 PGLWGNE--GYLD---GLADAYEQGLVKAVGVSNY 210
>03_06_0515 +
34457933-34458343,34458822-34459000,34459491-34459812,
34459945-34460025
Length = 330
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -2
Query: 169 STMSKPLNPGFLWLLFTIGHD 107
ST SKPL+PG ++L T+ +
Sbjct: 155 STKSKPLHPGLVFLYCTLNKE 175
>02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679
Length = 129
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 51 WSITDIYVLYTIVSFYNRPSWPIVKRSHKKPGFKGFDIV 167
W + I+VLY + + + +VK KK F G D+V
Sbjct: 43 WKVVVIHVLYHLCKAFKKIHVRLVKELEKK--FSGKDVV 79
>09_04_0616 + 18977421-18977907,18977984-18978245,18978903-18979149
Length = 331
Score = 25.0 bits (52), Expect = 8.4
Identities = 7/22 (31%), Positives = 14/22 (63%)
Frame = +3
Query: 51 WSITDIYVLYTIVSFYNRPSWP 116
WS + + + +TI ++ + P WP
Sbjct: 20 WSCSSMAMTFTIANYCSHPIWP 41
>06_03_1225 +
28538515-28538721,28538799-28539000,28539241-28539472,
28539560-28539713,28539792-28540136
Length = 379
Score = 25.0 bits (52), Expect = 8.4
Identities = 9/33 (27%), Positives = 16/33 (48%)
Frame = +3
Query: 120 VKRSHKKPGFKGFDIVDYLDXWKGMEEAKNLGL 218
++ PGF+ F +D G E +N+G+
Sbjct: 29 IQTEENYPGFRKFGFFQLVDATDGFSENRNVGI 61
>05_07_0173 + 28140484-28140869,28141079-28141481,28141719-28141781,
28142350-28142535,28144695-28145076,28145689-28145780,
28145988-28146737,28146969-28147100,28147149-28147247,
28147977-28148132,28150187-28150317,28150798-28151254,
28151327-28151668,28152137-28153001,28153112-28153170,
28153806-28154261,28154835-28154873,28155016-28155201
Length = 1727
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 188 FPGVQVIYNVETFESRFLMAPLHN 117
FPG+QV N E ++ LM LH+
Sbjct: 1349 FPGIQVALNQEKNQTSNLMHALHD 1372
>02_01_0179 -
1227573-1227803,1227916-1228138,1228159-1228185,
1228519-1228651,1228748-1228865,1229357-1229451,
1229886-1230048
Length = 329
Score = 25.0 bits (52), Expect = 8.4
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +3
Query: 183 WKGMEEAKNLGLAKSIGI 236
W ME+ ++GL +SIGI
Sbjct: 152 WHAMEDLVSMGLVRSIGI 169
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,939,834
Number of Sequences: 37544
Number of extensions: 120490
Number of successful extensions: 206
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 14,793,348
effective HSP length: 64
effective length of database: 12,390,532
effective search space used: 260201172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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