Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2f20
         (257 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110482-2|CAB60335.1|  316|Caenorhabditis elegans Hypothetical ...    39   4e-04
AL110482-1|CAB54385.1|  316|Caenorhabditis elegans Hypothetical ...    39   4e-04
AL110482-3|CAB60336.1|  339|Caenorhabditis elegans Hypothetical ...    37   0.002
Z75553-1|CAA99947.2|  320|Caenorhabditis elegans Hypothetical pr...    36   0.004
U55368-5|AAA97992.2|  333|Caenorhabditis elegans Hypothetical pr...    29   0.34 
Z71181-2|CAA94895.1|  301|Caenorhabditis elegans Hypothetical pr...    29   0.60 
U80844-1|AAB37976.1|  317|Caenorhabditis elegans Hypothetical pr...    27   1.4  
U39654-1|AAA80407.2|  131|Caenorhabditis elegans Hypothetical pr...    27   1.4  
Z81088-2|CAB03127.1|  297|Caenorhabditis elegans Hypothetical pr...    26   4.2  
Z49070-1|CAA88869.1|  384|Caenorhabditis elegans Hypothetical pr...    25   5.6  
X76116-1|CAA53722.1|  384|Caenorhabditis elegans carrier protein...    25   5.6  
Z68301-1|CAA92624.1|  360|Caenorhabditis elegans Hypothetical pr...    25   9.8  
X72943-1|CAA51448.1|  360|Caenorhabditis elegans Wnt-2 protein p...    25   9.8  

>AL110482-2|CAB60335.1|  316|Caenorhabditis elegans Hypothetical
           protein Y39G8B.1b protein.
          Length = 316

 Score = 39.1 bits (87), Expect = 4e-04
 Identities = 16/31 (51%), Positives = 21/31 (67%)
 Frame = +3

Query: 165 VDYLDXWKGMEEAKNLGLAKSIGISNFITTQ 257
           VDYL+ WK  E A+  G  +SIG+SNF  +Q
Sbjct: 136 VDYLETWKAFEAAQKAGKCRSIGLSNFTHSQ 166


>AL110482-1|CAB54385.1|  316|Caenorhabditis elegans Hypothetical
           protein Y39G8B.1a protein.
          Length = 316

 Score = 39.1 bits (87), Expect = 4e-04
 Identities = 16/31 (51%), Positives = 21/31 (67%)
 Frame = +3

Query: 165 VDYLDXWKGMEEAKNLGLAKSIGISNFITTQ 257
           VDYL+ WK  E A+  G  +SIG+SNF  +Q
Sbjct: 136 VDYLETWKAFEAAQKAGKCRSIGLSNFTHSQ 166


>AL110482-3|CAB60336.1|  339|Caenorhabditis elegans Hypothetical
           protein Y39G8B.2 protein.
          Length = 339

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 14/27 (51%), Positives = 20/27 (74%)
 Frame = +3

Query: 165 VDYLDXWKGMEEAKNLGLAKSIGISNF 245
           VDYL+ WK +E+A   G  +SIG++NF
Sbjct: 143 VDYLETWKALEDAHRSGKIRSIGLANF 169


>Z75553-1|CAA99947.2|  320|Caenorhabditis elegans Hypothetical
           protein ZC443.1 protein.
          Length = 320

 Score = 35.9 bits (79), Expect = 0.004
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = +3

Query: 177 DXWKGMEEAKNLGLAKSIGISNFITTQ 257
           D W+G E+   LGL K+IG+SNF  +Q
Sbjct: 133 DIWRGFEKVYGLGLTKAIGVSNFNESQ 159


>U55368-5|AAA97992.2|  333|Caenorhabditis elegans Hypothetical
           protein T08H10.1 protein.
          Length = 333

 Score = 29.5 bits (63), Expect = 0.34
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +3

Query: 165 VDYLDXWKGMEEAKNLGLAKSIGISNFITTQ 257
           + ++D W+ +E+    G  K++G+SNF   Q
Sbjct: 139 IAHIDTWRALEKLYKEGKLKALGVSNFSCNQ 169


>Z71181-2|CAA94895.1|  301|Caenorhabditis elegans Hypothetical
           protein K07C5.2 protein.
          Length = 301

 Score = 28.7 bits (61), Expect = 0.60
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +3

Query: 183 WKGMEEAKNLGLAKSIGISNF 245
           W+ +E+AK  G  +SIG+SN+
Sbjct: 144 WQTLEKAKESGRVRSIGVSNY 164


>U80844-1|AAB37976.1|  317|Caenorhabditis elegans Hypothetical
           protein C07D8.6 protein.
          Length = 317

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 177 DXWKGMEEAKNLGLAKSIGISNFITTQ 257
           D W+  +     GLAK++G+SN+   Q
Sbjct: 133 DVWRQFDAVYKAGLAKAVGVSNWNNDQ 159


>U39654-1|AAA80407.2|  131|Caenorhabditis elegans Hypothetical
           protein C56G3.2 protein.
          Length = 131

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 177 DXWKGMEEAKNLGLAKSIGISNFITTQ 257
           D W+  +     GLAK++G+SN+   Q
Sbjct: 103 DIWRQFDAVYKAGLAKAVGVSNWNNDQ 129


>Z81088-2|CAB03127.1|  297|Caenorhabditis elegans Hypothetical
           protein F53F1.2 protein.
          Length = 297

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +3

Query: 192 MEEAKNLGLAKSIGISNF 245
           +EEAK  G  +SIG+SN+
Sbjct: 145 LEEAKAAGKVRSIGVSNY 162


>Z49070-1|CAA88869.1|  384|Caenorhabditis elegans Hypothetical
           protein T09F3.2 protein.
          Length = 384

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 111 WPIVKRSHKKPGFKGF 158
           W ++KR + + GFKGF
Sbjct: 242 WQMIKRVYHREGFKGF 257


>X76116-1|CAA53722.1|  384|Caenorhabditis elegans carrier protein
           (c2) protein.
          Length = 384

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 111 WPIVKRSHKKPGFKGF 158
           W ++KR + + GFKGF
Sbjct: 242 WQMIKRVYHREGFKGF 257


>Z68301-1|CAA92624.1|  360|Caenorhabditis elegans Hypothetical
           protein W01B6.1 protein.
          Length = 360

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -1

Query: 254 CGDEVRYAYRFS 219
           CGD V Y Y+FS
Sbjct: 158 CGDNVEYGYKFS 169


>X72943-1|CAA51448.1|  360|Caenorhabditis elegans Wnt-2 protein
           protein.
          Length = 360

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -1

Query: 254 CGDEVRYAYRFS 219
           CGD V Y Y+FS
Sbjct: 158 CGDNVEYGYKFS 169


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,710,615
Number of Sequences: 27780
Number of extensions: 99798
Number of successful extensions: 158
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 12,740,198
effective HSP length: 64
effective length of database: 10,962,278
effective search space used: 230207838
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)