Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2f19
         (555 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|...    28   0.80 
SPCC126.14 |prp18||U5 snRNP-associated protein Prp18|Schizosacch...    26   4.3  
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo...    25   7.5  
SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase ...    25   9.9  
SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    25   9.9  

>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 28.3 bits (60), Expect = 0.80
 Identities = 20/73 (27%), Positives = 33/73 (45%)
 Frame = +3

Query: 264 DKDFSLKLKRVIXMFLNDEIENDKIYKLVETVDSSNKLSRRQVDFLIHALLNNVSVTFTL 443
           D D SL +  V  + +ND+I N+          +  +LS    D        +   TFT+
Sbjct: 196 DNDDSLDILNVPNL-VNDDIANNNAAPPPPLAQAQEQLSTENEDEFDIDDTTDKMTTFTM 254

Query: 444 HRFVDDNVLTXDE 482
           ++F D +VL  D+
Sbjct: 255 NKFADLSVLEEDD 267



 Score = 26.2 bits (55), Expect = 3.2
 Identities = 16/56 (28%), Positives = 30/56 (53%)
 Frame = +3

Query: 264 DKDFSLKLKRVIXMFLNDEIENDKIYKLVETVDSSNKLSRRQVDFLIHALLNNVSV 431
           D D +  L R+  +F+ND  +  + +K     + S    R+ V  L+HAL N++++
Sbjct: 514 DSD-NASLTRIDKIFINDVYQRMQQFKHSAIEEISLPPCRKYVRRLVHALANDLNL 568


>SPCC126.14 |prp18||U5 snRNP-associated protein
           Prp18|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 343

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 6/39 (15%)
 Frame = +3

Query: 315 DEIENDKIYKLVETVD------SSNKLSRRQVDFLIHAL 413
           +EIEN+ + K VET+D      +  K+S++ V FL H +
Sbjct: 164 EEIENELLTKGVETIDFEHATTTKPKVSKQVVAFLQHGI 202


>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 509

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +1

Query: 211 CPWSKPLLAIG 243
           CPW K LLA+G
Sbjct: 340 CPWQKSLLAVG 350


>SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 123 LLSWYFCLKSHQA 85
           LL+WYFC + H +
Sbjct: 175 LLNWYFCTQEHDS 187


>SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 398

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +3

Query: 69  LEIEXALDAILNKNTSSID***VLVKMSNLMKNFFTE 179
           + +E  LD ++N    ++    +L+KMS++MK   TE
Sbjct: 283 MSLESPLDIVVNAGAIALP---ILLKMSSIMKKKHTE 316


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,771,416
Number of Sequences: 5004
Number of extensions: 28102
Number of successful extensions: 64
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)