Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2f19
         (555 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34220| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_46530| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.8  

>SB_34220| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 452

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 13/47 (27%), Positives = 27/47 (57%)
 Frame = -1

Query: 141 RALIINLLSWYFCLKSHQALARFPIXFGRS*LYDSVCLLR*TRCFXF 1
           +AL+++ ++ +FC +SH  +      F ++ LY ++     TRC+ F
Sbjct: 24  KALVLSSVATHFCTRSHPNVRSIDSHFDKAELYHTI-----TRCYAF 65


>SB_46530| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 129

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 12/43 (27%), Positives = 25/43 (58%)
 Frame = +3

Query: 285 LKRVIXMFLNDEIENDKIYKLVETVDSSNKLSRRQVDFLIHAL 413
           L+R+  +F  + I N+++YK   +    N++  R++ +L H L
Sbjct: 12  LRRICGIFWPNVISNEELYKNTSSSSLVNQIRYRRLKWLGHVL 54


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,762,790
Number of Sequences: 59808
Number of extensions: 202752
Number of successful extensions: 379
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1288581898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)