Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2f19
         (555 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006610-3|AAK85449.1|  264|Caenorhabditis elegans Hypothetical ...    29   3.0  
AL033514-19|CAA22104.1|  696|Caenorhabditis elegans Hypothetical...    28   3.9  
Z49867-1|CAA90027.1|  312|Caenorhabditis elegans Hypothetical pr...    27   6.9  
AF100659-8|AAC68966.1|  688|Caenorhabditis elegans Hypothetical ...    27   9.1  

>AC006610-3|AAK85449.1|  264|Caenorhabditis elegans Hypothetical
           protein C30F12.3 protein.
          Length = 264

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +3

Query: 306 FLNDEIENDKIYKLVETVDSSNKLSRRQVDFLIHALLNNVSVT 434
           F  D+  N+KIYK V TV     L+R ++     AL +  S T
Sbjct: 207 FFRDKRNNEKIYKEVVTVKKIQLLTRMRISLSAEALGSESSHT 249


>AL033514-19|CAA22104.1|  696|Caenorhabditis elegans Hypothetical
           protein Y75B8A.19 protein.
          Length = 696

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +3

Query: 294 VIXMFLNDEIENDKIYKL 347
           V+ +FLNDE+ NDK+Y L
Sbjct: 206 VVEIFLNDELLNDKLYIL 223


>Z49867-1|CAA90027.1|  312|Caenorhabditis elegans Hypothetical
           protein C33D3.3 protein.
          Length = 312

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = -1

Query: 348 LVCRFCHFQFHRLKT 304
           LVCR CH  FH  KT
Sbjct: 162 LVCRNCHLYFHHYKT 176


>AF100659-8|AAC68966.1|  688|Caenorhabditis elegans Hypothetical
           protein F58E2.3 protein.
          Length = 688

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/22 (59%), Positives = 19/22 (86%), Gaps = 1/22 (4%)
 Frame = -3

Query: 451 NLCNV-NVTLTLFNNACIKKST 389
           NL NV NV++++F+NA IKK+T
Sbjct: 370 NLINVENVSVSIFDNAGIKKAT 391


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,707,922
Number of Sequences: 27780
Number of extensions: 159549
Number of successful extensions: 393
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)