Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2f18
         (680 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    23   1.8  
AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       22   4.0  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    21   7.1  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   9.3  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   9.3  

>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +1

Query: 499 DQRKC**NEKYRARCTYCRDWRSVQEG 579
           +++ C  +++ R RC YCR  + +  G
Sbjct: 124 EEKNCIIDKRQRNRCQYCRYQKCLNMG 150


>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
 Frame = +2

Query: 419 YSLPVNSSAADVTAELTSDGYL-----VVTAPISENVDKTKNTERVVPIVETGAPYKKDE 583
           Y  P  +   D +A + ++G +       T P  E V K  +  + V  V  G  Y+K  
Sbjct: 147 YGKPEQNYEVDESASVMTNGRIHGIQPSPTLPSKEEVSKKIDDNQKVGYVVEGRNYRKYR 206

Query: 584 PVEKTT 601
             E+T+
Sbjct: 207 VEERTS 212


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -1

Query: 248 RCPQKWGSVSTEEQTD 201
           +CP+K+G  +  EQ D
Sbjct: 38  QCPEKYGFFADAEQCD 53


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 500 ISENVDKTKNTERVVPIVETGAPYKKD 580
           I E V   +  +RVV  V+  A Y+K+
Sbjct: 164 IVETVYDPREDDRVVCYVQAAARYRKE 190


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 10/34 (29%), Positives = 13/34 (38%)
 Frame = -2

Query: 220 PQRSKQTEWRKVQPWERELVICNGDGLHDNFFVP 119
           P +     W  V  W   L + N   + D FF P
Sbjct: 621 PHQQHLDAWYWVMDWSDMLSVGNMTLILDKFFFP 654


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,225
Number of Sequences: 336
Number of extensions: 2677
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17801955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)