Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc2f18
         (680 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1032 + 27029698-27029785,27030640-27031275,27031739-270319...    31   1.1  
04_04_0201 - 23555336-23556008,23556097-23556258,23556353-235572...    29   2.6  
01_01_0092 + 722744-723459,723542-723711,723792-724885                 29   3.4  
05_05_0201 + 23206859-23206998,23207858-23207936,23208121-232082...    29   4.5  
01_03_0009 + 11601394-11601666,11602486-11602683,11602809-116030...    28   6.0  
04_04_1367 - 32974757-32975499,32975957-32976179                       28   7.9  

>06_03_1032 +
           27029698-27029785,27030640-27031275,27031739-27031993,
           27032451-27032605,27032704-27032783,27032891-27033026,
           27033228-27033377,27033474-27033641
          Length = 555

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +2

Query: 515 DKTKNTERVVPIVETGAPYKKDEPVEKT-TVETLDVSTTQEPXDISSSGSDCST 673
           D+ KN +       T A    +EP +++ T E  D S+T+EP D SSSG D S+
Sbjct: 43  DEAKNEDCSNSGSVTEAVVSSEEPSDRSSTEEPSDRSSTEEPSD-SSSGGDSSS 95


>04_04_0201 -
           23555336-23556008,23556097-23556258,23556353-23557206,
           23557452-23557613,23558197-23558649,23559729-23559788,
           23559983-23560058,23561546-23561593,23561948-23562022,
           23562067-23562494
          Length = 996

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
 Frame = +2

Query: 416 TYSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVPIVETGAPYKKDEPVEK 595
           T S+ V+  AA      + +G + VT+ +S+ VD+      V+P+    A  + DE   K
Sbjct: 659 TASMQVHEGAAAAQLGESPEG-VDVTSAVSDEVDRDDKATHVLPLAAAAADGESDELERK 717

Query: 596 ----TTVETLDVST 625
                +  T+D+ST
Sbjct: 718 RRKLDSCATMDMST 731


>01_01_0092 + 722744-723459,723542-723711,723792-724885
          Length = 659

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 137 VQPVTITDDQFTFPWLNLSPFSLFAPLWKLIPTFVDIGPRIY 262
           V+ ++  + +F     NL   S   PLW  +P F D+G ++Y
Sbjct: 89  VKDISYNESRFWVVDANLDNSSCPLPLWNNLPYFNDMGTKLY 130


>05_05_0201 +
           23206859-23206998,23207858-23207936,23208121-23208219,
           23208561-23208674,23208762-23208910,23209010-23209091,
           23209170-23209255,23209520-23209750,23209830-23210727
          Length = 625

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 25/102 (24%), Positives = 41/102 (40%)
 Frame = +2

Query: 374 KEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVPIV 553
           +ED+ D FA Q     +  V SS  D  +    D  LV   P++     +  +  VVP+ 
Sbjct: 314 EEDEDDEFA-QIARRKNKSVISS--DEASSSAGDQALVPVDPVTSEASSSVASNAVVPV- 369

Query: 554 ETGAPYKKDEPVEKTTVETLDVSTTQEPXDISSSGSDCSTGT 679
              +P       E+  ++ L ++    P   + S S    GT
Sbjct: 370 -DSSPASGTRTREQDMIDLLSLTLYSPPEASTDSSSQTQNGT 410


>01_03_0009 +
           11601394-11601666,11602486-11602683,11602809-11603081,
           11603493-11603595,11603666-11603784,11604038-11604214,
           11604443-11605192
          Length = 630

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +2

Query: 47  MFSPRLFAVFIAFAGFTTVTALPARDKEVIVQPV-TITDDQFTFPWLNL 190
           +FS + F VF+  AGF+    L    K  I++P  TI  D+ T  +L L
Sbjct: 129 LFSKKPFPVFLELAGFSPEDVLIEEPKAGILKPAHTILRDECTKSFLVL 177


>04_04_1367 - 32974757-32975499,32975957-32976179
          Length = 321

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 26/114 (22%), Positives = 45/114 (39%), Gaps = 3/114 (2%)
 Frame = +2

Query: 347 IFVQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTS---DGYLVVTAPISENVD 517
           I+ Q SQ+ +ED +  F  Q+ H++ L        +   L +   D        +++  D
Sbjct: 110 IYFQPSQKLEEDHNYKFVPQYIHSF-LSFGRKYFRINYYLENNRHDSSFQNEVDLAQGGD 168

Query: 518 KTKNTERVVPIVETGAPYKKDEPVEKTTVETLDVSTTQEPXDISSSGSDCSTGT 679
           +     R    +E G  +KK E  +      LD+  +    DI     D  TG+
Sbjct: 169 QLNRWRRAAQYLEAGIKFKKREYDKLKPHSLLDIWFSNGSMDIPCIVVDEYTGS 222


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,775,498
Number of Sequences: 37544
Number of extensions: 300670
Number of successful extensions: 872
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)